Limnohabitans sp. 63ED37-2: L63ED372_00708
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Entry
L63ED372_00708 CDS
T04121
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lih
Limnohabitans sp. 63ED37-2
Pathway
lih03420
Nucleotide excision repair
lih03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L63ED372_00708 (uvrD)
03430 Mismatch repair
L63ED372_00708 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lih03400
]
L63ED372_00708 (uvrD)
Enzymes [BR:
lih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L63ED372_00708 (uvrD)
DNA repair and recombination proteins [BR:
lih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L63ED372_00708 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
L63ED372_00708 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_12
AAA_30
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALK87934
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Position
740451..743024
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AA seq
857 aa
AA seq
DB search
MARSACTVCPEVDEIQGGGAVQVLGVRQLLSQVWVEGAVEVLHGVRTSYNRQMLSEFSPN
ASASPLLAQLNDEQHRAVALPTEHALILAGAGSGKTRVLTTRIAWLLQTSQVSPGGILAV
TFTNKAAKEMKLRLQSMLPVNVNAMWIGTFHGLCNRFLRAHHQLAGLPQTFQILDTQDQL
SAVKRLCKQFNVDEDRFPPKQVQYFISGCKEDGQRPGDVPVRDDETRRKVELYQLYEEQC
QREGVVDFGELMLRSYELLRDNAHVREHYRRRFRHILVDEFQDTNKLQYAWLKQLAGLPG
EGGECAILAVGDDDQSIYAFRGARVGNMADFVREFQVKHQIKLEQNYRSFSNILDSANHL
ISHNKTRLGKTLRTDQGAGEPVRVVESPSDFAEAQWLIEELRQLVKQDGFERKEVALLYR
SNAQSRVLETALFNAGFPYRVYGGLRFFERAEIKHALAYLRLMENPNDDTSFLRVVNFPP
RGIGARSIEQLQDAARAAGCSLHDAVSATTGKAGANLAAFVAMVDVLREQTEGMTLREII
DLVLDKTGLVNHYRAEKEGADRVENLEELVNAAESFVTQEGFGRSAVALPQGTSGLGQSP
ASQGLSRSTDADLGTVDEFSEDGVIMSPLAAFLTHASLEAGDNQAQAGEDAVQLMTVHAS
KGLEFDAVFITGLEEGLFPHENAMNDFDGLEEERRLMYVAITRARKRLYLSHSQTRMLHG
QTRYNLKSRFLDELPEECLKWVTPKNSGFSNLGQPASGGGSAPGGGWPQTPAFNRHARPA
WGQSSLSTETYKSPPVPVQKAAPEHGISAGKTVFHTKFGEGKVLAVEGVGADARAQVNFP
RHGVKWLALSVAKLTVV
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
gtggcacgctcagcttgcaccgtgtgtcccgaagtggacgaaatccaaggtggcggtgct
gtgcaggtgctcggagtgaggcaactgctcagccaagtgtgggttgagggagcggttgag
gtgttgcatggggtgcgaacttcctacaatcgacagatgttgtctgaattttcaccgaac
gcttcggcgtcccccttgctcgcccagctcaacgacgagcagcaccgggcggtggctttg
cccaccgagcacgccctgatcttggcgggtgcaggctctggcaaaacccgcgtgctgacc
acgcgcatcgcctggctgctgcagacctcgcaagtctcgcccggcggcattttggcggtg
accttcaccaacaaggccgccaaagagatgaagctgcgtttgcagtccatgctgccggtg
aatgtgaacgcgatgtggattggcacctttcacgggctgtgcaaccggtttttgcgggcg
catcaccagctggcgggtttgccgcagacctttcagattctggacacacaagaccagctc
tcggccgtcaagcggctgtgcaagcagttcaatgtggacgaagaccgcttcccgcccaag
caggtgcagtatttcatttcgggctgcaaagaagacggccagcgcccgggcgatgtgccg
gtgcgcgacgacgaaacgcgccgcaaggtggagctgtaccagctgtacgaagaacaatgc
cagcgcgaaggcgtggtggattttggcgagctgatgctgcgctcgtatgagctgttgcgt
gacaacgcgcatgtgcgcgagcattaccgccgccgttttcgtcacatcttggtggatgag
tttcaggacaccaacaagctgcaatacgcctggctcaagcagttggcgggtttgccgggc
gaagggggcgaatgcgccatcttggccgtgggcgacgacgaccagagcatttacgccttc
cggggtgcccgcgtgggcaacatggctgactttgtgcgtgagtttcaggtcaagcaccag
atcaagctggagcaaaactaccgcagcttcagcaacatcctcgattcggccaaccacctg
attagccataacaagacgcgtttgggcaaaaccctgcgcaccgaccaaggcgctggcgag
ccggtgagggtggtggagtcgccgtctgactttgccgaagcgcagtggctcatcgaagag
ctgcgccagttggtcaagcaagacggctttgagcgcaaggaagtggcgctgctctaccgc
agcaacgcccaaagccgggtgctggaaaccgcgctgttcaacgccgggtttccgtatcgg
gtgtatggtggtttgcgcttttttgagcgggccgagatcaagcacgcgctggcttatttg
cgcctgatggagaaccccaacgacgacaccagctttttgcgggtggtcaactttccgccg
cgcggcatcggggcgcgttccattgagcagctgcaagacgcggcccgcgcagcaggctgc
tcattgcacgacgccgtgagcgccaccaccggcaaggccggggcgaatttggcggctttt
gtggccatggtcgatgtgttgcgtgagcagaccgagggcatgacgctgcgcgagatcatt
gacttggtgttggacaagaccggcttggtcaaccactaccgcgccgaaaaagaaggcgct
gaccgggtggagaacttggaggaattggtcaacgcggccgagagttttgtcacccaagaa
ggttttgggcgcagtgcggtggctttgccgcaaggcacctcaggcctggggcaaagcccg
gccagccaaggcttgagtcgctcaacagacgcagacctcggcacggtcgatgagttcagc
gaagacggcgtgatcatgagcccgctggcagccttcctgacgcacgcttcgctggaggct
ggcgacaaccaagcgcaagcgggtgaagacgcggtgcaactcatgaccgtgcacgccagc
aagggactggagtttgacgcggtgttcatcaccggcttggaagaaggtctgttcccgcac
gaaaacgcgatgaacgactttgacggcttggaggaagaacgccgactgatgtatgtggcc
atcacccgtgcccgcaagcgcctgtacctgagccattcgcaaacgcgcatgctgcacggc
cagacccgctacaacctcaaaagccgctttctggacgagttgcccgaagagtgcctgaag
tgggtcacgcccaaaaacagcggcttttctaacttgggccagcccgcgagcgggggtggc
agcgccccgggtggcggctggccacaaaccccggccttcaaccgccatgcacgcccggct
tggggccaaagcagcctgagcaccgaaacttacaaaagtccgcctgtgccggtgcaaaaa
gccgcgcccgagcacggcatcagcgctggcaaaaccgtgttccacaccaaatttggcgaa
ggcaaagtgttggctgtggagggcgtgggggccgatgcccgagcgcaggtcaactttccg
cgccacggcgtgaaatggctggcgctgagcgtggctaaactcacggtggtttaa
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