Limnohabitans sp. 63ED37-2: L63ED372_00789
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Entry
L63ED372_00789 CDS
T04121
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lih
Limnohabitans sp. 63ED37-2
Brite
KEGG Orthology (KO) [BR:
lih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lih03019
]
L63ED372_00789 (hrpB)
Enzymes [BR:
lih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
L63ED372_00789 (hrpB)
Messenger RNA biogenesis [BR:
lih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L63ED372_00789 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
WHD_HA2
NACHT
AAA_19
T2SSE
nSTAND3
SRP54
AAA_23
nSTAND_NTPase5
PhoH
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALK88011
LinkDB
All DBs
Position
818570..822493
Genome browser
AA seq
1307 aa
AA seq
DB search
MSDTSLQIEFPEGLPVSARRDEIMAAMDQHQVIIVCGETGSGKTTQLPKIALMLGRGKLN
AKPGERARMIGHTQPRRIAASSVARRIAEELKTPLGEVVGFKVRFQDRLSKNASVKLMTD
GILLAETQTDPLLQAYDTIIIDEAHERSLNIDFLLGYLRQILPRRPDLKIVVTSATIDAD
RFAKHFASRNGPAPVIMVSGRTFPVEQRYRPFEESRDYGLNEAMADAVDELWQGGAGGDI
LIFLPGEREIREAADHLRKHLAHQPLTRGAEVLPLFARLSQAEQDQIFEASNGRRIVLAT
NVAETSLTVPGIRYVIDAGTARVKRYSLRSKVEQLLVEPISQAAANQRAGRCGRVANGIC
IRLYDEKDFAGRPRFTDPEILRSSLAGVILRMKSLHLGVVEDFPFIEAPSKRAITDGYQL
LAELGAVDDDNELTPIGQELARLPLDPRVGRMILEARGRNALDEVLVIASAMSVQDVRDR
PMDAQAQADQQHAKFDDDKSEFTGYLKLWKWIHDARGGPSKSIGVRSQLNAPAQEASQHK
LSNRQYEQLLRQNFINIRRVREWRDTHTQLLTVVSEHKWRINTQPASYEQLHLSMLAGLL
GNVGYKLEDEEAYLGARGIKFHKHPGAHLSKKPGRWIVVAELVETTRLFGRGIAAIEPQW
LEQVGAHLLRKQVLDPHWEKKSAEVVALERATLYGLVVYSGRRTAYSRVDLHGARDIFIR
EALVGNQWETKLPFLAANHKMIAKVEELEHKSRRQDVLVDDELIYAFYDQQIPAEVCSGR
LLEDWYRHESVKQPRLLLLSREELMRHEAAGITTQAFPKHIRLGGTDCQATYLHEPGDAR
DGVTVTVPLFVLNQVSEDRCEWLVPGLLKDKIQALLKSLPQRPRSRFVPLPESATRLAAE
LSVPELFGSGSLTDVLLKKARDETSLDIKRTDFKHEMLSPHLFMNLLVVDEHGRQLGMGR
NLGALKGELGAKARGAFQALAQLKVAAPPTPIPVQASANAPANTTGANRNNTAPAKAAAA
PKPLAPQRYTAWTFGELPELMEISKGGQTLIGFPALVDMQDAVTIEVFDEPDVAASKNRA
GLRRLFALQIKDALKYLEKNIPDLQKMAVAFMPLGTADELKAQIIDVALDRAFLLDPLPN
DEITFKRRIEEGRGRLTLIANEVARLAGTILLEFGAATRKIKDTKNAPDATADCTQQLQR
LMPKNFMAATPWPQLQHCARYLKAVTLRLDKYRADPARDAQRLAELKPQEQRYWRLVAER
KGAQDARMLEFRWVLEELRVSFFAQELRTPQPVSIKRLEKAWGQLNH
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgacacctccctccaaatcgagtttcccgaaggcctgcccgtctcggcccgccgt
gacgaaatcatggccgccatggaccagcaccaggtcatcatcgtgtgcggtgaaaccgga
tcgggcaagaccacgcagttgcccaaaatcgcgctgatgctggggcgcggcaagctcaac
gccaaaccgggtgaacgtgcgcggatgattggccacacccagccacggcgcattgcggcc
agctcggtggccaggcgaattgcggaggaattgaagacgccgctgggcgaggtggtgggt
tttaaggtgcggttccaggaccgtttgagcaaaaacgcgtccgtcaagctcatgaccgac
ggcattttgctggccgaaacccagaccgacccgctgctgcaggcctacgacaccatcatc
atcgacgaggcgcacgagcgcagcctgaacattgacttcttgctgggttatttgcgccag
atcctgccgcgccgcccggacctcaaaatcgtcgtgacctcggccaccatcgatgcagac
cgatttgccaagcactttgcctcgcgcaacggcccggccccggtcatcatggtgtccggc
cgcacattcccggtggagcaacgctaccgcccgtttgaagagtcgcgcgactacggcctg
aacgaggccatggccgatgcggtggacgaactttggcagggtggggcagggggcgacatc
ctgatctttttgcccggtgagcgcgagatccgcgaagccgccgaccacctgcgcaagcac
ttggcgcaccagccgctgacgcgaggcgccgaagtgctgccgctgtttgcccgcctgtcg
caggccgagcaagaccagatttttgaagcgtcgaatggccgccgcattgtgctggcgacc
aacgtggccgaaacgtcattgacggtgcctggcatccgctatgtgatcgacgcgggcacg
gcgcgggtcaagcgctacagcctgcgcagcaaggttgaacagttgctggttgagcccatc
agccaggccgcggccaaccagcgtgcgggccgctgcggccgcgtagccaacggcatttgc
atccgcctgtacgacgagaaagactttgcgggccgcccgcgcttcaccgacccggaaatt
ttacggtcgtctttggcaggcgtgatcttgcgcatgaagtcgctgcacttgggtgtggtg
gaagactttccgttcatcgaagcaccgtccaaacgtgccatcaccgacggctaccaactg
ctggccgagctgggcgcagtggacgacgacaatgaacttacaccgattggccaagagctg
gcccgcttgccgctggacccccgtgtgggccgcatgattttggaagcgcgtggccgcaat
gccttggacgaagtgctggtgatcgccagcgccatgagcgtgcaagacgtgcgcgaccgc
cccatggacgcacaagcccaggccgaccaacaacacgccaaattcgacgacgacaagagc
gagttcaccggttacctgaaactgtggaaatggatccacgacgcccgaggcggcccatct
aaatcaattggggtcagatcccaattaaatgcgcctgcgcaagaggcctcgcagcacaaa
ctcagcaaccgccaatacgagcagctgctgcgccagaacttcatcaacatccgccgcgtg
cgcgagtggcgcgacacccacacccagctgctcacggtggtgagtgagcacaagtggcgc
atcaatacccagcccgcgagctacgagcaattgcacctgtccatgctggcgggcctgctg
ggcaacgtgggctacaagctcgaagacgaagaagcctatctgggcgcacgcggcatcaag
ttccacaaacaccccggtgcgcacctgagcaaaaagccgggtcgctggatcgtggtggcc
gaactggtggaaaccacgcgtctgtttggccggggtattgcagcgattgagccgcagtgg
ctggagcaggtcggcgcgcacctgctgcgcaagcaagtgctcgacccgcattgggaaaag
aaatcggccgaagtggtggcgctggaacgcgccacgctttacggtctggtggtctacagc
gggcggcgcacggcctacagccgggtggacctgcacggcgctcgcgacatcttcatccgc
gaagcgctggtgggcaaccagtgggagaccaagctgcctttcctagccgccaaccacaag
atgatcgccaaggtcgaagagctggaacacaagtcgcgcaggcaagacgtgctggtggac
gacgaactgatctacgccttttacgaccagcagattccggccgaggtgtgcagcggtcgc
cttctggaagactggtatcgccatgagagcgtcaaacagccgcgcctgttgctgctgagc
cgcgaagaactgatgcgccacgaagcggcaggtatcaccacgcaggcttttcccaaacac
attcgtttgggaggcaccgactgccaagccacctatctgcacgagcccggcgacgcccgc
gacggcgtcacggtgacggtgcctttgtttgtgctgaaccaagtcagcgaagatcgttgc
gaatggctagtgcccggcctgctcaaagacaaaatccaggccctgctcaaaagcctgccg
cagcgcccgcgcagccgctttgtgccgctgcccgaatcggccacgcgcttggccgccgag
ctgtcggtgcccgagctgtttggcagcgggtcgctcaccgatgtgctgctcaaaaaagcc
cgcgacgaaaccagcctggacatcaagcgcaccgacttcaaacacgagatgctcagcccg
catctgttcatgaacctgctggtggtggacgagcacggccgccagctgggcatgggccgc
aacctgggtgcgctcaaaggcgagctgggtgccaaagcgcgtggcgcgttccaggcgctg
gcgcagctcaaagtggcggcaccgccgacgccgattcccgttcaggcatcggccaacgcc
ccagcaaacacaacaggcgccaaccgcaacaacaccgcaccggccaaagccgccgcagcg
cccaagcccctggccccccagcgctacaccgcctggacctttggcgagctgcccgagctg
atggaaatcagcaaaggcggccagaccctgatcggcttcccggcgctggtggacatgcaa
gacgccgtgaccatcgaggtgtttgacgagcccgacgtggctgccagcaaaaaccgcgcg
ggcctgcgccgcctgtttgcgctgcaaatcaaagacgccctcaaataccttgagaaaaac
atccccgacctgcaaaagatggccgtggccttcatgccgctgggcacggccgacgagttg
aaagcccagatcatcgacgtggcgctggaccgcgcctttttgctcgacccgctgcccaac
gatgaaatcaccttcaaacgccgcatcgaagagggccggggccgcctgaccctgattgcc
aacgaagtggcccggctggcgggcaccatcttgttggagtttggcgcggccacccgcaag
atcaaagacaccaaaaacgcccccgacgcgactgcagactgcacgcagcaactgcaacgc
ctgatgcccaaaaatttcatggccgccaccccatggccgcagctgcagcactgcgcccgc
tacctgaaagccgtgaccctgcgcctcgacaaataccgcgccgaccccgcccgcgacgcc
cagcgcctggcggagctgaaaccccaagagcaacgctactggcgcttggtggccgaacgc
aaaggcgcccaagacgcccgcatgctggagttccgctgggtactggaggagctgcgcgtg
agcttcttcgcgcaagagctgcgcacgccgcagccagtcagcatcaagcggctggagaag
gcttgggggcagttgaatcactag
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