Limnohabitans sp. 63ED37-2: L63ED372_00804
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Entry
L63ED372_00804 CDS
T04121
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lih
Limnohabitans sp. 63ED37-2
Pathway
lih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L63ED372_00804 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lih03019
]
L63ED372_00804 (rne)
03009 Ribosome biogenesis [BR:
lih03009
]
L63ED372_00804 (rne)
Enzymes [BR:
lih01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L63ED372_00804 (rne)
Messenger RNA biogenesis [BR:
lih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L63ED372_00804 (rne)
Ribosome biogenesis [BR:
lih03009
]
Prokaryotic type
rRNA processing factors
L63ED372_00804 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
ALK88026
UniProt:
A0A0P0M7V7
LinkDB
All DBs
Position
complement(837964..841086)
Genome browser
AA seq
1040 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAEGVSVSQARIQDVIKEGQSLLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGATQGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYDQAQQ
FMSHVMPEFAPRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVD
VNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEEAKNRREVENRL
RDALRQDRARVQFGSISKFGLLEMSRQRLKPALSEGASIPCPRCGGAGHIRDTESSALQI
LRIIQEESMKDNSAAVHAQVPVEVASFLLNEKRSEIAKIELQQRINVLLVPNKSLETPHY
KLERLKHDDPRLDRIEASYKMAEEIEDATTVTRRSQEPTNKQTPVIKGVLPDAPAPAAPA
KPEAPVAAKPVAKAAAAAPVAAPAAAASGGFFGWLKNLFGGTAAEPVAAPAAKPEEKARE
GRREGGRDGGRESGRDGRRGGRDGRRGERSEGAAGEVRAPREGGRRGEGRIEGREGEARP
PRGERAERGERTERGERGERSERASGDRPAREGRRDGRSSVRGENLAEGQRTDSLSEGRT
DAPTELNAEGKEVRPERAPREAREGRRERGERGGEGRRERGERSERRPGEVNEASASEAA
LGSEQTADANATTEGTGAAENGERRERRSRDRYGRDRRERAGDTRPDAAADQASGDDTAE
PARQNAEAQAEDRPAPRSYFERAQQAAAPQANQETAPVNAQPAAPAADAVTTPVSQQAPV
APVAPVAPVAPVAAAPAPAPAPAPAPAPAPVPAPAASPAPAAAASTAQTAPTSAPAASTA
LPVVASYTLPIDSLQQVAQNSGLVWVNSDSAKVAAVQAAIAAEPPAVRVPRERPPAVVVN
EGPLVLVETRKDLNTLQVPF
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgatcaacgccacgcaagctgaagagcgccgcctggccatcgtcgac
ggacaaaaactcctcgactacgaaatcgaaatcgaaggccgcgaacaacgcaagggcaac
atctacaaagccgtcgtgacccgcgtcgagccctcgctcgaagcctgctttgtggactac
ggcgaagaccgccacggctttttacccttcaaggaaatctcccgccaatactttgccgaa
ggcgtctctgtcagccaggcccgcattcaggacgtcatcaaagagggccagtccctcttg
gtgcaggtcgaaaaagaagagcgcggcaacaagggcgcggccctgaccaccttcgtcagc
ttggctggccgctacgtggtactgatgcccaacaacccccgtggcggtggcgtcagccgc
cgcatcgagggcgacgaccgggccgagctcaaagaagcgatggaccagttggaatacccc
aaaggcatgtccatcattgcccgcaccgcaggcattggccgctccgcgcccgagctgcag
tgggacctgaactacctgctcaagctgtggaccgcgattgacggcgccacccagggcaaa
ggcgctttcctgatttaccaagaatcgtcgctggtcatccgcgcgattcgagactacttc
aacaacgacatcggcgacatcctgatcgacaccgacgacatttacgaccaggctcagcag
ttcatgagccacgtgatgcccgagttcgcaccccgcgtgaagcgttaccgcgacgacgcg
ccgctgttcagccgcttccagatcgagcaccagatcgagtcggcctatgcccgcacggtg
cagctgccttcgggtggcgccatcgtgatcgaccacaccgaagctttggtgtcggtggac
gtgaactcggcccgcgccatcaagggcggcgacatcgaagaaaccgcgacccgcaccaac
ctcgaagccgctgacgaagtggcccgccagatgcgcttgcgcgacctgggcggcctgatc
gtgatcgacttcatcgacatggaagaggccaagaaccgccgcgaagtggaaaaccgcttg
cgtgacgcgctgcgccaggaccgcgcccgcgtgcagtttggctcgatcagcaagtttggc
ttgctggaaatgagtcgccagcgcctcaagcccgccctgagcgaaggcgcatccatccct
tgccctcgttgcggcggtgcaggccacatccgcgacaccgaaagctcggcactgcaaatc
ctgcgcatcatccaagaagagtccatgaaggacaacagcgccgccgtgcacgcccaagtg
cccgtcgaagtcgcgtctttcctgctcaacgaaaagcgctccgagatcgccaagatcgag
ttgcagcagcggatcaacgtgctgctggtacccaacaaatcgctggagacgccgcactac
aaactcgagcgcttgaagcacgacgacccgcgcctggaccgcatcgaagccagctacaag
atggccgaagaaatcgaagacgcgaccaccgtgacacgccgctcgcaagagcccaccaac
aagcaaacgccggtcatcaagggcgtgctgcccgacgcacctgcgccagcagcaccggcc
aagcctgaagcgcctgtggcagccaagcccgtggccaaagccgcagccgcagccccggtg
gctgcgcctgcagcggcagcttctggcggtttctttggctggttgaaaaacctgttcggc
ggcacagcagccgagcccgtggctgcaccagcggccaagccagaagagaaagcccgcgaa
ggccgccgtgaaggtggtcgcgatggtggccgtgaatcaggccgtgatggccgccgtgga
ggccgcgatggccgccgaggcgagcgcagcgaaggcgcggctggcgaagtccgcgcgcca
cgcgaaggtggacgccgtggtgaaggccgcatcgaaggccgtgaaggcgaagcacgtccc
ccacgcggtgagcgtgccgaacgcggtgagcgcacggagcgtggtgaacgcggtgagcgc
agcgagcgtgcaagcggtgatcgccctgcccgtgaaggccgccgtgatggccgttcatcc
gtgcgtggtgagaacctggccgaaggccagcgcaccgacagcctgagcgaaggccgcacc
gatgccccaacggaattgaatgccgaaggcaaagaagtgcgcccagagcgtgcccctcgc
gaggcccgtgaaggccgccgcgaacgtggcgagcgcggtggcgaaggccgccgtgaacga
ggcgagcgctctgagcgccgcccgggcgaagtcaacgaagccagcgcttctgaagcggct
ttgggcagcgagcaaacagcagacgccaacgccacaacagagggcacaggcgcagctgaa
aacggtgaacgccgcgaacgccgctcacgtgaccgctacggccgtgaccgccgcgaacgc
gcgggtgatacacgcccggacgcagcagctgatcaagcctcaggcgatgacaccgccgag
ccagctcgccagaacgctgaagcccaggcggaagaccgccctgccccacgctcttatttc
gagcgtgcacagcaagcagcagccccccaggccaaccaggaaacggcaccggtgaatgca
cagccagcggcgcccgccgcggatgcagtgacaacacccgtgagccaacaggcgcctgtt
gcccctgttgcccctgttgcccctgtggcccctgtggccgctgcgccagcgccagcacct
gctccagcacctgctccagcacctgctccagtacctgcaccagcagcttcgcctgctcct
gcggccgcagccagcacggcacagaccgcccctacaagcgctccggcagccagcacagcc
ttgcctgtggtggccagctacaccttgcccatcgacagcctgcagcaagtcgcacaaaac
tccggtttggtgtgggtcaactccgacagcgccaaagtcgctgcggtgcaagccgccatc
gcggccgagcccccagccgtgcgtgtgcctcgcgagcgcccacccgcggtggttgtgaac
gaaggccccttggttttggtggaaacacgcaaagacttgaacacactccaagtgccgttc
tga
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