Limnohabitans sp. 63ED37-2: L63ED372_00945
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Entry
L63ED372_00945 CDS
T04121
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lih
Limnohabitans sp. 63ED37-2
Pathway
lih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L63ED372_00945 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lih03019
]
L63ED372_00945 (rhlE_1)
Enzymes [BR:
lih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L63ED372_00945 (rhlE_1)
Messenger RNA biogenesis [BR:
lih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L63ED372_00945 (rhlE_1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ALK88166
UniProt:
A0A0P0M7U3
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All DBs
Position
complement(981219..983063)
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AA seq
614 aa
AA seq
DB search
MNFEELNLAPAIMQAVRELGYETPTPIQAQAIPAVLAGQDLLAGAQTGTGKTAAFTLPML
HKLSLTEPGKNRFGGKAIRALVLTPTRELAAQVEESVRDYGKYLQLDSTVIFGGVGMNPQ
INKVKKGVDILVATPGRLLDLQGQGFLDLSTVEMLVLDEADRMLDMGFIHDVKKVLALVP
KDKQSLLFSATFSDEIRELAGNLLKNPQSIQVTPSNTTVQRITQVIHPVGRSKKKDVLLH
IIQKHDWSQVLVFTRTKFGANNVADFLTKNGVKAMALHGNKSQTARTQALAGFKSGEIRA
LVATDIAARGIDIEDLPHVVNFEIPNVSEDYVHRIGRTGRAGASGEAVSLVCLDEEGFMM
DIERFTKQEIPVQLLEGFGPEPGEVAEPIAMGRQTLWGGAGKPPSRDVMAAAAKAARQDM
MQRIRDNKVAVGGGGGGGQRQPRAEGQGQPRPSRNAPPPSRRNGPQGAPRFEGQVDGRRE
GGRDGNREGGRGQGQRGDPRFDNRADGQGRPAPRGPRPEGRGPARGGQGGQGGGQDRRRD
DGDELPRHIDPLKTTQFARLDLPNRKPVRTSGQPDPTRTSIDSLASSGRRHGGGGFGGGN
RGGNGGGGRGGFGR
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgaagaattgaacctggccccggccatcatgcaagctgtgcgcgagctcggc
tacgaaacccccacgcccatccaggctcaagccattcccgccgtcttggccggacaagac
ttgctcgcaggtgcgcaaaccggcaccggcaaaactgccgctttcacactgcccatgctg
cacaagctgagcctgaccgaacccggcaaaaaccgctttggcggcaaagccatccgcgcc
ttggtgctcacgcccacccgcgaattggccgcccaggtcgaagagtcggtgcgtgattac
ggcaaataccttcagctcgactccaccgtgatctttggtggtgtgggcatgaacccacaa
atcaataaggtcaaaaaaggcgtggacattttggtggccacaccgggtcgtttgcttgac
ctgcagggtcagggtttcctggacctgtctaccgttgagatgctggtgctcgacgaagcc
gaccgcatgctggacatgggctttattcacgatgtgaaaaaagtgctcgccttggtgccc
aaagacaagcaaagcctgctgttctcggccaccttcagcgacgagatccgcgagttggcg
ggcaacttgctcaagaatccgcaaagcatccaagtcacgcccagcaacaccaccgtgcag
cgcatcacacaagtgatccaccctgtgggccgcagcaagaaaaaagacgtgttgttgcac
atcatccagaagcacgactggagccaggttttggtgttcacccgcaccaaattcggcgcg
aacaatgtggccgacttcctgaccaaaaatggcgtcaaagccatggccctgcacggcaac
aagagccagaccgcccgcacacaagcgctggctggtttcaagagcggcgagatccgcgct
ttggtggccaccgacattgcagcgcgcggcatcgacatcgaagacttgccacacgtcgtg
aactttgaaatcccgaacgtgtcggaagactatgtgcaccgcattggccgcactggccgc
gcgggcgccagcggtgaggccgtgagcctcgtctgcttggacgaagaaggcttcatgatg
gacatcgagcgcttcaccaagcaagagattccagtgcagttgctcgaaggctttggcccc
gagccaggcgaagtggccgagcccatcgccatgggccgccaaactttgtggggcggcgca
ggcaagccccctagccgcgatgtgatggcagcagctgccaaagccgcacgccaagacatg
atgcaacgcatccgcgacaacaaggtcgccgtgggtggtggcggcggtggcggtcaacgc
caaccccgcgcagaaggtcagggccagccccgtccttcgcgcaacgcaccgcctccatcc
cgccgcaacggtcctcaaggcgcaccgcgttttgaaggccaggtcgatggtcgccgcgaa
ggtggccgtgacggcaaccgcgaaggcggtcgtggacaaggccagcgcggcgatccgcgc
ttcgacaaccgagccgacggccaaggtcgtccagcaccccgcggcccacgtcctgaaggc
cgtggccctgcccgtggcggccagggtggtcaaggtggcggtcaagaccgtcgccgtgat
gatggcgacgaattgccacgccacattgatccgctcaaaaccacgcagtttgcacgcctg
gacttgcccaaccgcaagcccgtgcgcaccagtggccagcctgacccgacccgcaccagc
atcgacagcttggccagcagtggccgccgtcatggcggtggtggcttcggcggtggcaac
cgtggcggtaacggcggcggtggccgtggcggcttcggtcgctga
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