Limnohabitans sp. 63ED37-2: L63ED372_01099
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Entry
L63ED372_01099 CDS
T04121
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lih
Limnohabitans sp. 63ED37-2
Pathway
lih03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L63ED372_01099 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lih03400
]
L63ED372_01099 (mfd)
Enzymes [BR:
lih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L63ED372_01099 (mfd)
DNA repair and recombination proteins [BR:
lih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L63ED372_01099 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALK88311
UniProt:
A0A0P0M8D1
LinkDB
All DBs
Position
complement(1134217..1137708)
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AA seq
1163 aa
AA seq
DB search
MQLPSLISGKRFTLPRPAGSADAVLLAQLAQREKKAGKLTAIVTSDAADAQRLMDELVFF
APDLRCVMFPDWETLPYDTFSPHQDLISERLATLWRIKQRNHAESADVVLVPATTALYRL
APPSFLAGYTFEFKVKQKLDEAQLKAQLTLAGYSHVSQVVSPGEYAVRGGLIDLFPMGSL
VPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDAARARFRSRWRELLEG
DPTKSRIYKDMGNGVATAGIEYYLPLFFEETATVFDYLGAGQADDATVVLHGDLEPAFQR
FWQDTKDRYRLVQGDPERPVLPPDALFLSAEQFYTLTNGHAQLALRPGTQDVPDNTLAQP
LPELTVVRGAEDPLSRLQAHIRSSASRVLILAESDGRRESLLDFVRSSGLTPPVFDSLQA
FLASDEKVGMATAGLVSGFHWFEHNIDLVTETELFAAGSVTRRRKKQEQVSDVEALIKDL
SELNVGDPVVHSAHGIGRYRGLVNMDMGQKNEDGTPALQEFLHLEYADKATLYVPVSQLQ
LIGRYTGVSADEAPLHKLGSGQWEKAKRRAAEQVRDAAAELLNIYARRAAREGHPFRYSP
QDYETFANDFGFEETADQKAAIHCVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVT
GGKQVAILAPTTLLAEQHYQTLKDRFAKWPVKVAEVSRFRSGKEVTAALKGIADGTVDIV
VGTHKLLSESTKFHDLGLLIIDEEHRFGVRHKEAMKGLRAEVDVLTLTATPIPRTMGMAL
EGLRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRKQ
KLEEILPEARIAVAHGQMPERELEQVMRDFVAQRYNILLCSTIIETGIDVPTANTIVISR
ADKFGLAQLHQLRGRVGRSHHQAYAYLMVPEIEGLTKQAAQRLDAIQQMEELGSGFYLAM
HDLEIRGAGEVLGENQSGNMLEVGFQLYNEMLSEAVRCLKAGKEPDLLSPLSVTTDINLH
APALLPNDYCGDVHLRLSFYKKLATAKTSDQIDALLEELVDRFGKLPPQAQTLVDVHRLR
VLTQPYGVIKVDAAPGVIQITFKPNPPVDPMAIIGLIQKNKHIKLAGNDKIRIERELPDP
KARAQMVRDVLRSLGTPKVEVAA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgcccagcctgatttccggcaaacgtttcaccctgccccgccccgccggatcg
gccgatgccgtgctgctggcccagttggcccagcgcgagaaaaaagcaggcaagctcacc
gccatcgtcaccagtgacgcggccgacgcgcagcgcctgatggacgagctggtgtttttt
gcgcccgatctgcgctgtgtgatgtttcccgactgggaaaccctgccgtatgacaccttc
tcgccgcaccaggacttgatctctgaacgcttggccacactctggcgcatcaagcagcgc
aaccacgccgagagcgccgacgtggtgctggtgcccgccaccacggcgctgtacaggctg
gcgccgccgtcctttttggcgggctacaccttcgagttcaaggtcaagcaaaagctggac
gaagcccagctcaaggcccaactgacattggcgggctactcgcatgtgagccaagtggtc
agccccggcgaatacgcggtgcgcggcggcttgatcgacctcttccccatgggctctttg
gtgccttaccgggtggacctgttcgacgacgagatcgacagcatccgcaccttcgacccc
gacagccagcgcagcctctaccccgtacccgaggtgcggctcttgcccgggcgcgagttc
ccgatggacgatgcggcccgtgcgcggttccgaagccgctggcgcgagctgctcgaaggc
gacccgaccaagagccgcatttacaaagacatgggcaacggcgtggccacggcgggcatc
gagtactacctgccgctgttttttgaagaaaccgccaccgtgttcgactatctcggcgca
gggcaagcagatgacgccaccgtggtgctgcacggcgatctggagcccgccttccagcgc
ttttggcaagacaccaaagaccgctaccgcctggtgcagggtgaccccgagcggcccgtg
ctgccgcccgatgcgctgtttttgagcgccgagcagttctacacgctgaccaacggccac
gcgcaactggctttgcgcccaggcacgcaagacgtgcccgacaacacgctggcccagccc
ctgcccgagctgacggtggtgcgcggcgccgaagacccgctgtcacgcctgcaagcgcac
atccgcagcagtgccagccgcgtgttgatcctggccgaaagcgatggccgccgcgagagc
ctgctcgacttcgtgcgctccagcggcctcacacccccggtgttcgacagcctgcaagcc
tttttggccagcgacgaaaaagtcggcatggccaccgcgggtctggtcagcggtttccac
tggtttgagcacaacatcgacctggtcaccgaaaccgaactcttcgccgcagggtccgtg
acgcgacgccgcaaaaagcaggaacaggtcagcgatgtggaagcgctgatcaaagacctg
agcgagctgaatgtgggcgacccggtggtgcacagtgcccacggcattggccgctaccgg
ggtctggtcaacatggacatgggccagaaaaacgaagacggcacgcccgccctgcaagag
tttttgcacctggagtacgccgacaaagccacgctttatgtgccggtgagccagctgcag
ctgattggccgctacacgggcgtgagcgccgacgaagcgccgctgcacaagctgggctct
ggccaatgggaaaaggccaaacgccgcgccgccgaacaggtgcgcgacgccgccgccgag
ttgctcaacatctacgcccgccgcgccgcacgcgagggccacccattccgctacagccca
caagactacgaaacctttgccaacgacttcggcttcgaggaaaccgccgaccaaaaggcc
gccatccactgcgtcattcaagacatgatcagcccccgccccatggaccgcctggtctgc
ggcgatgtgggctttggcaagaccgaggtcgcgctgcgtgccgcttttgtggccgtcacg
gggggcaaacaagtggcgattttagcgcccaccacactgttggccgagcagcattaccag
acgctcaaagaccgttttgccaaatggcccgtgaaggtggccgaggtctcacgctttcgc
tcgggcaaagaagtcaccgctgccctcaaaggcattgccgacggcacggtggacatcgtg
gtcggcacccacaagctgctgagcgaatcgaccaagttccacgacctgggcctgctcatc
atcgacgaggaacaccgctttggcgtgcgccacaaagaggccatgaaaggcctgcgggcc
gaggtcgatgtgctcacactcaccgccacccccatcccccgcaccatgggcatggctttg
gaaggcctgcgcgatttgagcgtgattgcgactgcaccacaacgccgcctggccatcaag
acctttgtgcgtaacgaaggcacgggcgtgatccgcgaggcggtgctgcgcgaactcaaa
cgcggcggccagtgctactttttgcacaacgaggtcgagaccatcgagaaccgcaagcaa
aagctcgaagaaatcctgcccgaagcccgcatcgccgtggcccacggccaaatgcccgag
cgcgagctggagcaggtgatgcgcgactttgtggcccagcgctacaacatcttgctgtgc
tcgaccatcattgagaccggcatcgacgtgcccacggccaacaccatcgtgatctctcgc
gctgacaagttcggcctggcccagctgcaccagctgcgcggacgcgtgggccgctcgcat
caccaagcctatgcctatttgatggtgcccgagatcgaaggcctgaccaaacaagccgcc
cagcggctcgacgcgatccagcagatggaagaactgggcagcggtttttatttggccatg
cacgacctggagatccgcggcgcgggcgaagtgctgggcgaaaaccagagcggcaacatg
ctcgaagtgggttttcagctgtacaacgaaatgctgtccgaagcggtacgctgcttgaaa
gcaggcaaagagcccgatttgctcagccccctgtcggtcaccaccgacatcaacctgcat
gcccccgccctgctacccaacgactattgcggcgacgtgcacctgcgcctgagtttttac
aaaaagctggccaccgccaaaaccagcgaccagatcgacgccctgctcgaagaactggtg
gaccgctttggcaagctgcccccgcaagcgcaaaccctggtggatgtgcaccgcctgcgc
gtgctgacccagccttatggcgtcatcaaggtcgacgccgcgccgggtgtcatccaaatc
accttcaaacccaacccacccgtggaccccatggccatcatcggcctgatccaaaagaac
aaacacatcaaactggcaggcaacgacaaaattcgcatcgagcgcgaactgcccgacccc
aaggcgcgggcgcagatggtgcgggatgtgctcaggagtttgggaacgcccaaggtggag
gtggcggcataa
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