Limnohabitans sp. 63ED37-2: L63ED372_01221
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Entry
L63ED372_01221 CDS
T04121
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lih
Limnohabitans sp. 63ED37-2
Pathway
lih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L63ED372_01221 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lih03019
]
L63ED372_01221 (recQ_1)
03400 DNA repair and recombination proteins [BR:
lih03400
]
L63ED372_01221 (recQ_1)
Enzymes [BR:
lih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L63ED372_01221 (recQ_1)
Messenger RNA biogenesis [BR:
lih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L63ED372_01221 (recQ_1)
DNA repair and recombination proteins [BR:
lih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L63ED372_01221 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_16
RecQ_Zn_bind
HTH_Cmi2_C
Motif
Other DBs
NCBI-ProteinID:
ALK88432
UniProt:
A0A0N7J8K3
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All DBs
Position
1261040..1263139
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AA seq
699 aa
AA seq
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MNTASHSQGPLPPKREFAEQHMHTILARLAGPGAVPRADQVDAVHAVLQPASRVLVVQAT
GWGKSAVYWAATHAIRSTGAGPTLVVSPLLALMRDQVSAAERAGLKAATVNSTNIDDWDK
VFQRLDEDAIDVLLVSPERLGNPRFAARLGALLARVGLIVIDEAHCISDWGFDFRPDYQR
LARALLSTPTASVLATTATANERVTLDIGKQLGDSTVTFRGTLARTSLTLSVVPGLSPLQ
RYAWIADALEQLPGSGIVYVLTVAEAERLTAFLRSCGHAVDAYSGQTDADTRLQVEERLR
HNQVKAVVATSALGMGYDKPDLGFCVHVGSPSTPVAYYQQVGRAGRAVAHAEGVLLPSDA
DERIWDYFATASIPDAATAAKVLQSLGSDGRSLLEIEADTGVRRGRLEALLKILAVEGVV
DKDGSAWQATGVPYEHDTAKWTALAQVRQQEAGIMRQYAHGQGCLMAYLQTALDDPAPAP
CGRCSVCTGHLPFPGLSPSADKLIAARDFLRGMDVDIEQRKRWPGGVGRKGSIRGFDAGR
AVAFADDPGWVAELQALRLATSGAGHGEVPPELLSGAVATLGRWAKNWPARPVCVLPLPT
PNMAANRQLATHIAQKGRLPLHDVFSWQGGPAPDDSASTPVVAHLESAIRLAADAALPAG
PVLLVATQVRTRWAATVAAALLRERGAAQVLVLALHLQP
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagccagtcactcgcaaggaccattgccgcctaagcgcgagttcgccgagcag
cacatgcacaccatcctggcccgccttgccgggccgggggcagtgccccgtgccgaccaa
gtggacgcggtgcatgcggtgctgcaaccggcgtcgcgcgtgttggtggtgcaagccacc
ggatggggcaagtcggcggtgtactgggcggccacgcacgcgatccgcagcacaggcgct
ggccccaccttggtggtgtcgcccttgctggcactgatgcgcgaccaggtcagcgccgcc
gagcgggcgggcctcaaggcggccacggtgaactccaccaacatcgacgattgggacaag
gtgtttcagcggctggacgaggacgccattgacgtgctgctggtctcgcccgagcggctg
ggcaacccgcgctttgcagcgcggctgggcgctttgttggcccgggtaggtttgatcgtg
atcgacgaagcacattgcatcagcgactgggggtttgacttccggcccgattaccagcgg
ctggcgcgggcgctgctgtccacgcccacggccagcgtgttggccaccacggccacggcc
aacgagcgggtcacgctggatattggcaagcagttgggcgattccacggtgacctttcgc
ggcacgctggcccgcacttcgctcactttgtcggtggtgccgggtttgtcgcccttgcag
cgctacgcctggattgccgatgcgctcgaacaattgcctggctcgggcattgtgtatgtg
ctcacggtggccgaggccgagcgcttgacggcttttttgcgcagctgcggccatgcggtg
gacgcctacagcgggcaaaccgatgccgacacgcgtttgcaagtggaagagcgtttgcgc
cacaaccaggtcaaggcggtggtggccacgtcggcgctgggcatgggttacgacaagccg
gacctggggttttgtgtgcatgtgggctcgccctcgaccccggtggcctattaccagcag
gtcgggcgtgcgggccgggcggtggcgcatgccgaaggagtgttgttgccgtcagatgcc
gacgagcggatttgggattactttgccaccgcgtcaattccagatgctgcgacagccgcc
aaggtgttgcaaagcttgggcagcgatgggcgcagcttgctcgagatcgaggcggacacc
ggcgtgcgccgggggcggctggaagcgctgctcaaaattttggcggtcgaaggcgtggtg
gacaaagacggctctgcgtggcaggccacgggtgtgccgtatgagcacgacacggccaaa
tggaccgcgctggcccaggtgcgtcagcaagaggcgggcatcatgcgccagtacgcacac
ggccagggctgtctgatggcctatttgcagaccgcgctggacgatccagcgcccgcgccg
tgtggccgatgctcggtgtgtaccgggcatttgccgtttccggggctgtcgccttcagcc
gacaaactgatcgccgcaagggactttttgcgcggcatggatgtggacatcgagcagcgc
aaacgctggccgggtggggtggggcgcaaggggagcattcggggctttgatgcgggccgt
gctgtggcctttgccgacgaccccggttgggtggccgagctgcaggctttgcgcctggcc
accagcggggcaggtcatggcgaggtgccgcctgagctgctgtccggggctgtggccacg
ctgggccgttgggccaaaaactggcctgcgcggcccgtgtgtgtgttgccactgcccacg
cccaacatggcggccaaccggcaattggcgacgcacattgcgcaaaaaggccgtttgcct
ttgcacgatgtgttcagctggcagggcggccccgcgcccgatgacagcgcctccacgccc
gtggtggcgcacctggagtcggccatccgcctggctgccgatgccgcgctgcccgcaggt
ccggtgctgctggtggctacccaagtgcgcacccgttgggctgccacagtggcagcggcg
ctgctgcgcgaacgtggggccgctcaggtgctcgtgctggctttgcatttgcagccttga
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