Limnohabitans sp. 63ED37-2: L63ED372_01574
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Entry
L63ED372_01574 CDS
T04121
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lih
Limnohabitans sp. 63ED37-2
Pathway
lih03030
DNA replication
lih03430
Mismatch repair
lih03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L63ED372_01574 (dnaE)
03430 Mismatch repair
L63ED372_01574 (dnaE)
03440 Homologous recombination
L63ED372_01574 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lih03032
]
L63ED372_01574 (dnaE)
03400 DNA repair and recombination proteins [BR:
lih03400
]
L63ED372_01574 (dnaE)
Enzymes [BR:
lih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L63ED372_01574 (dnaE)
DNA replication proteins [BR:
lih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
L63ED372_01574 (dnaE)
DNA repair and recombination proteins [BR:
lih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
L63ED372_01574 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ALK88781
UniProt:
A0A0P0M9B7
LinkDB
All DBs
Position
complement(1649552..1653079)
Genome browser
AA seq
1175 aa
AA seq
DB search
MFVHLRLHTEFSVVDATCRIDDVVKIAAKDAQPALAITDLSNLFGTVKFYKEGRGKGVKP
IIGAEIHLEGLGGDVGVTSRVVLLVQNHTGYLNLCELLARAWTQNIVKGVAVVKLAWLKE
LSDGLILLSGAQAGPVGQAIVQGDTDKAADVALQLGSIFPHRFYLELQRAGRPEDEPQVA
GAVALAARLGLPVVATHPVQFHSPEDYEAHEARVCVSEGEILANPRRVRRFTREQYFKSA
AQMSALFADVPSAIANTLEIAKRCNLTLVLGKPQLPNFPIPPVAGVVMSVDEYFRHVSHE
GLKERLVHLYPDAAKREAERQRYVDRLEFELNTILKMGFPGYFLIVGDFIQWAKNNGCPV
GPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQTNRDRVIEYV
KQKYGREAVSQIVTFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGMSVTLQYPPA
TPKEGDKNNYAIAMEPILAERIEREEDVKTLIELAQKLEGMTRNVGMHAGGVLIAPGKLT
DFCPLYQQPGSESAVSQYDKDDVEAAGLVKFDFLGLATLTILEIAREFIIKRHKGQENFA
FENIPLDDAPTYKLFSDGKTEAVFQFESRGMQGMLRDARPSRLEDLIALNALYRPGPMDL
IPSFVARKHGREPVEYPHPAVAQMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAM
GKKKAEEMAEHREKFRAGALATHNIPQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHT
GWLKVHYTAEFFCANMTVEMDDTDKLKVLHEDALKFGIRFDPPDVNRGTHRFEPVTDKII
RYGLGAIKGTGQQAIDAIVAAREQGGPFTSLFDFAVRVDRTRINKRTVDALIKAGAFDSL
HMNRAALSASIDRAFEFSAATTANVNQGGLFDMLGDDSHGSSTQEPELVEVMPWGIKERL
LLEKTAVGFFLSGHLFDAVEREVRQFARRKIDDLIDSRESMVLAGIVSDLRIINGQRGKV
AIFKLDDKSGMLEATADEALINSAKHLLKDDELIIVTAKMQADRFSGGFRLKIEQIMDLA
AARCRFGKYLRVAVNGRAPDIARIVKEFPAQREQTEHGDLVRGLPVRLVLERSKDQLAAR
AELALGDTAKFFPTDAALASWMAQADQGLAQIVYD
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcacctgcgccttcacaccgaattttccgtcgttgacgccacttgccgcatc
gacgatgtggtcaagatcgcggccaaggacgcccagcctgcgctggccatcaccgacctg
agcaacctgtttggcaccgtcaagttctacaaggaaggtcgtggcaaaggggtcaagccg
atcattggggccgaaatccacctcgaaggcctggggggcgacgttggggtcaccagccgg
gtggtgctcttggtgcaaaaccacaccgggtacctgaacctgtgcgagctgctggcccgt
gcctggacgcaaaacatcgtcaagggcgtggccgtggtcaagctggcctggctcaaggaa
ctgtctgatggtttgattttgctctcgggtgcgcaagccggtcctgtgggccaggccatc
gtgcaaggcgataccgacaaggccgccgacgtggcgctgcagttgggttcgatctttcca
caccgtttttatctggagttgcaacgcgcgggtcgtcctgaagacgagccacaggtggcg
ggcgccgtggcgctggccgctcgtttgggtttgccggtggtggccacccacccggtgcaa
tttcacagccctgaagattacgaggcgcatgaggcccgggtctgtgtgtccgaaggcgaa
attttggccaacccgcgacgggtgcggcgcttcacccgggagcagtatttcaaatcggcg
gcgcaaatgtccgccttgttcgccgatgtgcccagtgccattgccaacaccttggaaatc
gccaagcgctgcaacctgaccttggtcctgggcaagccgcagctgcccaatttcccgatt
ccaccggttgctggtgtggtcatgtcggtggacgagtatttccgccatgtctcgcacgaa
ggcctgaaagagcgtttggtccacctgtaccccgatgcggccaagcgcgaggccgaacgc
caacgctatgtggaccggctggagttcgagttgaacaccatcttgaagatgggctttccg
ggttacttcctcatcgtgggcgacttcatccaatgggccaagaacaatggctgcccggtg
gggcctggccggggttcgggtgcgggctcgctcgtggcctacgccctcaagatcaccgac
ctggaccccttgcaatacaacttgctgttcgagcgttttttgaaccccgagcgggtgtcg
atgcccgacttcgacatcgatttttgccagaccaaccgcgatcgtgtgatcgagtatgtg
aagcaaaaatacgggcgcgaagcggtcagtcagatcgtgacctttggcaccatggccgcg
cgtgcggccattcgcgatgtgggccgtgtgcttgacatgagctacaccttttgcgacggc
atcagcaagctcattcccaataagcctggcatgtcggtcacgctgcagtatccgcctgct
acgcccaaagaaggcgataaaaacaactacgcgatcgccatggagcccattttggccgaa
cgcatcgagcgcgaagaggatgtgaagacgctgatcgagttggcgcaaaaactggaaggc
atgacccgcaacgtgggcatgcacgctgggggtgtgctgatcgcgccgggcaagctcacc
gacttttgcccgctctaccagcagcccggcagcgaatcggcggtgagccagtacgacaag
gacgacgtggaagcggccggtttggtgaagttcgacttcttgggcttggccacactcacc
attttggagatcgcccgcgagttcatcatcaagcgccacaaaggccaggaaaacttcgcc
tttgaaaacatcccgctcgacgacgcgccaacttataaattgttctcggacggtaaaacc
gaggccgtgttccagtttgaaagccgcggcatgcaaggcatgctgcgcgatgcgcggccc
agccgccttgaagatctgattgcgctcaacgccttgtaccgtccgggccccatggatctg
atccccagctttgtggcccgcaagcacggacgcgagccggtggagtacccgcacccggcg
gtggcgcagatgctgagcgaaacctacggcatcatggtttaccaagagcaggtgatgcag
accgcgcagattctgggcggttactcgctgggcggcgccgacttgctgcgccgcgccatg
ggcaagaaaaaagccgaagaaatggctgagcaccgcgaaaaattccgcgcgggcgctttg
gccacacacaacatcccgcaggacaaggccgacgaggtctttgacctgatggaaaaattt
gcgggctatggcttcaacaagtcacacgccgccgcttactcgctgctggcctaccacacg
ggttggctcaaggtgcactacaccgccgagttcttctgcgccaacatgacggtggaaatg
gacgacaccgacaagctcaaggtgctgcacgaagacgcgctcaaattcggcatccgcttt
gacccgcccgacgtgaaccggggtacacaccgctttgagccagtgaccgacaagatcatt
cgttatggtctgggcgccatcaagggcacgggtcagcaggccattgatgccatcgtggcg
gcccgcgaacagggcggacccttcaccagcctgtttgatttcgccgtgcgagtggaccgc
acccgaatcaacaaacgcacggtggacgcgctcatcaaggccggggcttttgactccttg
cacatgaaccgcgccgctttgtcggccagcatcgaccgggcgtttgagttttctgcggcc
accaccgccaacgtcaaccaagggggtttgttcgacatgctgggcgacgactcccacggc
tcgagcacccaagagcccgagttggtcgaggtcatgccctggggcatcaaagagcgcttg
ctgctcgagaaaaccgcagtgggatttttcctgtccgggcatttgttcgacgcggtcgag
cgggaagtgcgccagtttgcccgccgcaaaatcgacgacctgatcgacagccgcgagtcc
atggtcttggcgggcatcgtgagcgacttgcgcatcatcaacggccagcggggcaaggtg
gccattttcaagttggacgacaaatcgggcatgttggaagccacggccgacgaagcgctg
atcaattcggccaaacatttgctcaaagacgacgagctcatcatcgtcacggccaagatg
caggccgaccgtttttcaggcggtttccgtctcaagatcgagcagatcatggacctggct
gcggcccgttgccgcttcggcaagtacctgcgtgtcgcggtgaatggccgtgcgccagac
atcgcccgcatcgtcaaagagttccccgcgcaacgcgagcagaccgagcacggtgacttg
gtacgcgggctgcctgtgcgcttggtgctggagcgcagcaaggaccaactggccgcccgc
gccgagctggcgctgggcgataccgccaaattcttcccgaccgacgccgccttggccagt
tggatggcgcaggccgatcaaggcctggcgcagattgtttacgactga
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