Limnohabitans sp. 63ED37-2: L63ED372_01826
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Entry
L63ED372_01826 CDS
T04121
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lih
Limnohabitans sp. 63ED37-2
Pathway
lih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L63ED372_01826 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lih03019
]
L63ED372_01826 (pnp)
03016 Transfer RNA biogenesis [BR:
lih03016
]
L63ED372_01826 (pnp)
Enzymes [BR:
lih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
L63ED372_01826 (pnp)
Messenger RNA biogenesis [BR:
lih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
L63ED372_01826 (pnp)
Transfer RNA biogenesis [BR:
lih03016
]
Prokaryotic type
tRNA degradation factors
L63ED372_01826 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_RRP5
KH-I_KHDC4-BBP
KH_KhpA-B
aRib
OB_RRP5_4th
DNA_pol3_a_NI
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
ALK89030
LinkDB
All DBs
Position
complement(1919050..1921155)
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AA seq
701 aa
AA seq
DB search
MSIFNKVTKTFQWGQHTVKMETGEVARQAGGAVLLDMEGTVVLATVVGSKIAKAGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFYNDVHVVIHTV
SLNPEVDADIAAMIAVSAALSISGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSVMDLV
VAGTEAAVLMVESEALQLSEEIMLGGVVYGHEQSAIAINAIHELVREAGKPVWDWQAPAR
DTAFESKLATLAEEKLRAAYQIRNKQARTHACREAYASVKVALAEEGVAFDPVKLDNLLF
EIEARIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGT
DRDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAAVLPGK
EEFPYTVRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMSTANTEVSDFAPKLFTMKINPEKIRDVIGKGGATIRALTEETGCQINISEDGTITIA
ATDGEKAEIAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER
VEKVTDYLSEGQIVKVKVMETDEKGRIKLSMKALLDRPAQG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtccatttttaacaaagttaccaaaaccttccagtggggccagcacacggtcaagatg
gaaaccggcgaagtggctcgccaagctggcggcgctgtgctgctcgacatggaaggcacc
gtggtgctcgccaccgtcgtgggttccaagatcgccaaagccggtcaagatttcttcccc
ctcacggtcgattacatcgagaagacttacgccgcaggcaagatccccggcagcttcttc
aagcgtgaagccaagcccagcgagcacgagaccctgaccagccgtctgatcgaccgaccc
atccgtcctctgttccccgaaggtttctacaacgacgtgcacgtggtcatccacaccgtg
tctttgaaccctgaagttgacgccgacatcgccgcgatgatcgccgtgtctgccgctttg
tccatctcgggcatcccgttcaacggccccatcggcgccgctcgcgtgggttacatcaat
ggcgaatacgtcctgaaccccggccagacccagcgcaaagacagcgtgatggatctggtc
gtggccggtaccgaagcggctgtgctgatggtcgaatccgaagccctgcaactgtccgaa
gaaatcatgctgggcggtgtggtgtatggccacgagcagtcggcgattgccatcaacgcc
atccacgagttggtgcgcgaagccggcaagcccgtgtgggactggcaagcgcctgcccgc
gacacggctttcgaaagcaagttggccacactggccgaagaaaagctgcgtgccgcttac
caaatccgcaacaagcaagcccgtacacacgcttgccgcgaagcctacgcttcggtcaaa
gtcgctttggcagaagaaggcgtggcgtttgaccccgtcaagctcgacaacctgttgttc
gaaatcgaagcccgcatcgtgcgcagccagattttggccggtgagccccgcatcgacggc
cgcgacactcgcactgtgcgtcccatcgaaatccgcaacagcgtgctgccccgcacccac
ggctcggcgctgttcacacgtggcgaaacccaggctttggtgatcaccaccctgggcacc
gatcgcgatgcacagcgcatcgatgcgctggcgggcgagttcgaagaccgcttcatgttc
cactacaacatgcctccctttgccacgggtgaagtgggccgcatgggcagcaccaagcgc
cgcgaaatcggccacggccgtttggccaagcgtgctttggccgctgtgttgccaggcaaa
gaagagttcccctacaccgtgcgtgtggtgtctgagatcaccgaatcgaacggttcttcg
tccatggcttcggtctgcggcggctgcttgtcgatgatggatgcgggtgtgccgatgaaa
gcccacgtggccggtatcgccatgggcctgatcaaggaagacaaccgctttgcggtgttg
accgacatcttgggtgacgaagaccacctgggtgacatggacttcaaagtggccggtacc
accaacggtatcaccgcgctgcagatggacatcaagatccagggcatcaccaaagaaatc
atgcaggtcgctctggcccaggccaaagaagcccgcatgcacattctgggcaagatgcaa
gaagcgatgagcacggccaacaccgaagtgtctgacttcgcgcccaagctcttcaccatg
aagatcaaccccgagaagatccgtgacgtgatcggcaaaggcggcgccaccatccgcgcc
ctgaccgaagagaccggctgccagatcaacatctcggaagacggcacgatcaccatcgcg
gccaccgacggcgagaaggccgagatcgccaagaagcgcatcgagcagatcaccgccgaa
gtcgaaatcggcaaggtctatgaaggcccagtcaccaagatcttggacttcggtgccctg
atcaacctgctgcccggcaaagatggtctgctgcacatcagccagatcgcccacgagcgc
gttgagaaggtgaccgactacctgagcgaaggtcagatcgtcaaagtcaaggtcatggaa
accgacgaaaaaggccgcatcaagctgtcgatgaaggctttgttggaccgtcctgctcaa
ggctaa
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