Limnohabitans sp. 63ED37-2: L63ED372_02083
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Entry
L63ED372_02083 CDS
T04121
Symbol
rhlE_3
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lih
Limnohabitans sp. 63ED37-2
Pathway
lih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L63ED372_02083 (rhlE_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lih03019
]
L63ED372_02083 (rhlE_3)
Enzymes [BR:
lih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L63ED372_02083 (rhlE_3)
Messenger RNA biogenesis [BR:
lih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L63ED372_02083 (rhlE_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALK89286
UniProt:
A0A0P0MAC3
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All DBs
Position
complement(2168419..2169870)
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AA seq
483 aa
AA seq
DB search
MTDSFSNLSLAPTLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLP
LLQRLLKHENPSTSPARHPVRALVLLPTRELADQVAQQIKMYAKYTQLRSAVVFGGMDMK
PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSF
LPKQRTTLLFSATFSPEIKRLAGSYLQNPITIEVARPNETASTVEQRFYAALDDDKRRVI
RKVLDDRGIKQAFIFVNSKLGCGRLARSLEREGLRTAALHGDKSQDERLKALEAFKKGEV
DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSPSDARL
VGDIEKLIKKKLDVETLQLDTAPTGPAPEKWGTRAEDRPRARASEGRRREEFDPRDALDA
PRERRGGFRPAPVNRDPFFSKPYEAPSADVSPSWDAVPKAPRSSISANIKPKRKVAALFK
SEG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactctttttccaatttatcgctggcgcccacgctggcacgagccgtggccgaa
atgggctacgaatccatgacccctatccaggcccaagccattccggtggtgttgacgggc
caggacgtgatgggcgcagcccaaaccggtacgggcaaaacggcggctttctctctgcct
ttgctgcagcgcctgctcaagcacgaaaacccctcgacctctcccgcccgtcacccagtg
cgtgccttggtgttgttgcccacgcgtgagctggctgaccaagtggcccaacaaatcaag
atgtacgccaagtacacccagctgcgcagtgcggtggtgtttggcggcatggacatgaag
ccccagacgctcgagctgaaaaaaggcgttgaggtgctggtggccacacccggtcgtttg
ctggaccacatcgaagccaaaaacgccgtgctcaaccaggtcgaatatgtggtgctggac
gaagccgaccgcatgctcgacatcggttttttgcccgatctgcagcgcatcctgagcttt
ttgcccaagcagcgcaccacgctgctgttctcggccacgttttcgcccgagatcaagcgc
ctggccggcagttacctgcaaaaccccatcaccatcgaagtggcccgccccaacgagacg
gcgtccacagtggaacagcgtttttacgccgccctagacgatgacaagcgccgtgtgatc
cgcaaggtgctggacgaccggggcatcaagcaggccttcatttttgtgaacagcaagctc
ggctgcggccgccttgcccgctcattggagcgcgagggcttgcgcacagctgctttgcac
ggcgacaagagccaagacgagcgcctgaaagcgctggaagccttcaaaaagggcgaagtc
gatttgctggtgtgcaccgacgtggccgcgcgtggtctggacatcaaggatgtgcccgcc
gtgttcaacttcgatgtgcccttcaacgccgaagactatgtgcaccgcattggccgcaca
ggccgcgctggcgcctccggcttggccgtgacattggtcagcccttctgacgcccgtttg
gtgggcgacattgaaaagctgatcaagaaaaagctggacgtcgaaaccctgcagctggac
acggcacccactggccccgcgcccgagaagtggggcacccgcgccgaagaccgcccgcgt
gcccgcgcctccgaaggccgtcgccgcgaagagtttgacccgcgtgacgccctggacgcg
ccgcgcgagcgccgaggcggcttccgccccgcacccgtgaaccgcgaccccttcttcagc
aagccttacgaggcaccctctgccgacgtttcgccgagctgggacgccgtgcccaaagca
ccacgctcgtccatctcggccaacatcaagcccaagcgcaaggtcgcagcgctgtttaaa
tccgaagggtga
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