Limnohabitans sp. 63ED37-2: L63ED372_02261
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Entry
L63ED372_02261 CDS
T04121
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lih
Limnohabitans sp. 63ED37-2
Brite
KEGG Orthology (KO) [BR:
lih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lih03016
]
L63ED372_02261 (rnb)
Enzymes [BR:
lih01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L63ED372_02261 (rnb)
Transfer RNA biogenesis [BR:
lih03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
L63ED372_02261 (rnb)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
ALK89464
UniProt:
A0A0N7J8Y2
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All DBs
Position
complement(2409947..2412007)
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AA seq
686 aa
AA seq
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MYVFFEDAGKFMAGRIMSEAEASAQVELDSGKRVKVKSAHMLLKFEKPAPAVLLSDATAL
SQTIELELAYECAPEEEFGFGDLAKDYFSASASTTEQVAALLCLHDAPHYFRRGGAKGRF
RKAPAEIVQQALLAIEKKKQVQAQIEAWSADLIAGICPEPIREQLYKILFRPDQNTPEYK
AVVEASKSSQTAPLDLLQNAGAIASAWDFHWQRFLFDLFPKGTGFPPLQAPAITDDLPLA
SVQAFSIDDSHTTEIDDALSLQGLGTGMVTVGIHIAAPGLALQPGSPIDQLGRARLSTVY
MPGYKITMLPDSVVQAYTLIEGRDCPAVSLYVTFSEDTLEVQSSVTRLERVPILVNLRHD
QLDDRITREWLEGVDQSDHADVPVSRHTLAFFWRLAQTLKARREVVRGKPENFNRPDYSF
KLERDHNDTPPTGDETVVIGTRKRGAPLDLMVAEAMILANSTWGQWMAQLGVPGIYRSQA
SLAPGVKVRMGTKALPHAGIGVPSYAWSTSPLRRYTDLVNQWQIIACAQHGATAALAAPF
KPKDAELFSIISGFDAAYSAYNGVQSSMERYWTLRHVQQQGIEELDASLVKEMGAGTWLV
RADTLPLMFSVLGANNLPRGARVRVKLSDVDLMALDVRGTVIAHLDAEGQADSDEAEQDG
EDDDNLPAGPVTIAVDLNDNTPSNAP
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtattttttgaagatgccggcaaattcatggccggtcggatcatgtccgaagcc
gaggcctctgcgcaggtcgaacttgactccggtaaacgggtcaaggtcaagtcggcccac
atgctgctcaagttcgagaaaccggccccagccgttttgctcagtgatgccaccgccttg
agccaaaccatcgaactggagctggcctacgagtgtgccccggaggaagagtttggcttt
ggcgacctggccaaagactacttcagcgccagtgccagcaccaccgagcaagtggcggct
ttgctctgcttgcatgatgcgccgcactatttccgccgaggcggtgccaaggggcgcttt
cgcaaagccccggccgagatcgtgcagcaggccttgctcgccatcgagaagaaaaagcag
gtgcaggcccaaatcgaggcctggtcggccgatctgatcgcgggcatttgccccgagccg
atccgcgagcagctctacaaaattctgtttcgccccgaccagaatacacccgaatacaag
gccgtggtcgaggccagcaaaagcagccagaccgcgcctttggacttgctgcaaaacgcg
ggggccatcgcctcggcctgggactttcattggcagcgtttcctgtttgacctgttcccc
aaaggcacgggctttccccctttgcaggcacccgccatcaccgacgacttgccactggct
tcggtgcaggctttttcgatcgacgattcacacaccaccgaaatcgacgacgccctgtct
ttgcaaggtctgggcacgggcatggtcacggtgggcattcacatcgccgcccccggcctg
gcgctgcagccgggcagcccgattgaccagctgggtcgcgcccgcctgtccacggtctac
atgcccggttacaaaatcaccatgctgcccgacagcgtggtgcaggcctacaccctgatc
gaggggcgcgactgcccggcggtgtcgctgtacgtgaccttcagcgaagacaccctggaa
gtgcaaagcagcgtgacccggctcgaacgcgtgccgattttggtcaacctgcgccatgac
cagctcgatgaccgcatcacccgcgaatggctggagggtgttgaccagagcgaccacgcc
gatgtgccagtgagccgccacacgctggccttcttctggcggctggcgcaaaccctgaaa
gcccggcgcgaagtggtgcgcggcaaacccgaaaacttcaaccgcccggactacagcttc
aagctcgagcgggaccacaacgacacgccgcccacgggcgacgagacggtggtgatcggc
acccgcaaacgcggtgcgccactcgacttgatggtggccgaggccatgatcttggccaac
agcacctggggccagtggatggcccagctgggtgtgcccggcatttaccgcagccaggcc
agtttggcccccggagtgaaagtgcgcatgggcaccaaggcgctgccgcacgccggcatt
ggcgtgcccagctatgcctggagcacctcgccgctgcgccgctacaccgacttggtcaac
cagtggcaaatcattgcctgcgcccagcatggcgctacggccgcattggccgcgcccttc
aagcccaaagacgccgagttgttttccatcatcagtggttttgatgccgcctacagtgcc
tacaacggtgtgcagtcgagcatggagcgctattggacgctgcgccatgtgcagcagcaa
ggcattgaagagctggatgccagcctggtcaaggaaatgggcgctggcacctggctggtg
cgtgccgacaccttgccgctgatgttcagcgtgttgggtgccaacaacttgccccgcggc
gcacgggtgcgtgtcaagctgtccgatgtcgatctgatggctctggatgtgcggggtacc
gtgatcgcccacttggatgccgaaggccaggcagattctgacgaggcggaacaagacggc
gaggatgatgacaacctgcccgctggccccgtcaccatcgcggtggatctgaacgacaac
accccctccaatgcgccctga
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