Limnohabitans sp. 63ED37-2: L63ED372_02410
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Entry
L63ED372_02410 CDS
T04121
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lih
Limnohabitans sp. 63ED37-2
Pathway
lih03410
Base excision repair
lih03430
Mismatch repair
lih03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
L63ED372_02410 (recJ)
03430 Mismatch repair
L63ED372_02410 (recJ)
03440 Homologous recombination
L63ED372_02410 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lih03400
]
L63ED372_02410 (recJ)
DNA repair and recombination proteins [BR:
lih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
L63ED372_02410 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
L63ED372_02410 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L63ED372_02410 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF4088
Motif
Other DBs
NCBI-ProteinID:
ALK89611
UniProt:
A0A0P0MAL6
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All DBs
Position
2566863..2568572
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AA seq
569 aa
AA seq
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MNLLTRDVPPRSAWALEQAGVHPLLARLYAARGVLSKDELDDALNLLLPPAGMLGTQEAA
KLLADAMAHNKRLCIVADYDCDGATACAVGVRGLRMLGANNVSYLVPDRVVDGYGLTPPI
AERVHAQGADVLITVDNGIASVAGVQAAQALGLQVLVTDHHLPGSELPSAEVIVNPNQPG
CSFTSKSIAGVGVMFYVLLALRAELRQRGVFDASNQPRLDALLPLVALGTVADVVKLDPN
NRRLVAQGLRRVRAGAMPPGMAALMRAASRETAKATTFDFGFALGPRINAAGRLADMTLG
IECLLTDDTGRADELARQLDAINRERRVIEGDMREMAMEMAESLFDEGDEPPPAICVFDP
DFHEGVVGIVASRIKDKLHRPTFVFAASSAPGKEHELKGSGRSIAGFHLRDALDLVAKRT
PGVLLRFGGHAMAAGCTIAEEHLDVFEETLNQVALEWLDAATLQRRLETDGPLPAEYRRV
DLVEMLHHEVWGQGFAPPVFCEEIEIVSQRLVGEKHLSLKMKHQGQPVEGIWFGRTEPLP
SRVKLAYRLDADEWQGQKRVRFLVEGAEL
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgctcacccgagatgtgcccccccgcagcgcctgggcgctggaacaagcgggc
gtccaccccctgctggcccgcctgtatgcggcgcgtggcgtactgtccaaagacgaactc
gatgacgcgctgaacctgctgctgcccccggcgggcatgttggggacgcaagaagcagcc
aagttgctggccgatgccatggcgcacaacaagcgcctgtgcatcgtggccgattacgac
tgcgacggcgccaccgcttgcgccgtgggtgtgcgtggcctgcgcatgctgggggcaaac
aatgtgagctacctggtgcccgaccgcgtggtcgacggctatggcctgaccccacccatt
gccgagcgggtgcacgcacaaggcgcggatgtgctgatcaccgtggataacggcatcgcc
agcgtagcgggcgttcaggccgcgcaggccctgggcctgcaggtgctggtcaccgaccac
catttgcctgggagtgagttgcccagcgccgaagtcatcgtcaaccccaaccagcccggc
tgcagcttcaccagcaaatccatcgcgggtgtgggtgtgatgttttacgtgctgctggcc
ctgcgggccgagctgcgccagcgcggcgtgtttgacgcgagcaaccaaccgcgcttggac
gctttactgccgctggtcgctttgggcacggtggccgatgtggtcaagctcgaccccaac
aaccgccgcctggtggcgcagggcctgcgccgcgtgcgggccggggccatgccgccgggc
atggccgcgctgatgcgtgccgccagccgcgaaaccgccaaggccaccacttttgacttt
ggttttgccttggggccacgcatcaacgcggcaggccgcttggccgacatgacactgggc
atcgaatgcttgctgaccgacgacacaggccgcgccgacgagctggcgcggcagctggac
gcgatcaaccgcgagcgccgcgtgatcgagggtgacatgcgcgagatggcgatggagatg
gccgagtcgctgtttgacgaaggcgacgagccgccgcccgccatttgtgtgttcgacccg
gattttcacgaaggcgtggtcggcatcgtggcctcgcgcatcaaggacaaattgcaccgc
cccacctttgtgttcgcggccagcagcgccccgggcaaggagcatgaactcaaaggctca
ggccgctccatcgcaggctttcatttgcgtgacgcgcttgatttggtggccaaacgcacc
ccgggcgtgttgctgcgttttggtggccacgccatggcagcgggctgcacgattgccgaa
gagcacctggatgtgtttgaagaaacgctgaaccaagtggccctggaatggctggacgcg
gccacgctacaacgccgtctggaaaccgatgggccgctgcccgccgaataccgccgggtg
gatttggtggagatgctgcaccacgaagtctggggccagggatttgcaccgcccgtgttt
tgcgaagagatcgaaatcgtgtcgcaacgcttggtgggcgagaaacacctgtcactcaag
atgaagcaccaaggccagccggtcgagggcatctggtttggccgcaccgagcctttgcca
tcacgcgtcaaattggcctaccggctggatgccgacgagtggcagggccaaaagcgggtg
cgctttttggtggagggcgctgagctttaa
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