Listeria ivanovii subsp. ivanovii WSLC 3010: JL52_05185
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Entry
JL52_05185 CDS
T03400
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lii
Listeria ivanovii subsp. ivanovii WSLC 3010
Pathway
lii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL52_05185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lii03019
]
JL52_05185
Messenger RNA biogenesis [BR:
lii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JL52_05185
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AIS64982
LinkDB
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Position
complement(1070606..1072273)
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AA seq
555 aa
AA seq
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MKFVKNNETAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYSYL
VKNKDKIKGLFITHGHEDHIGGVPYLLRELNIPIYAGKLASALIRNKLEEHGLLRQTKIY
EYEEDDVFKFRKTSISFFRTTHSIPDTYGIVVKTPSGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNAEVPNFTMSERVVGESIKNIFRDVEGRIIFATFASNIYRLQQ
VVESSIETGRKIAVFGRSMESAMEIGKQLGYIQAPKDTFIDVHQLNKTPAGNVTILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNTTSVNRTINLLYQAGAEVIHGKV
NNIHTSGHGGQQEQKLMLRLMKPKFFMPIHGEFRMQKIHAQSAEECGVPEDNSFIMANGD
VLALTSETAHVAGKIHAASVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKNSRV
LAGPDIISRGFIYMRESGNLIGEAQGLLTRHLNKVMEQNTTQWSEIKNEITDTLQPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgtaaaaaataatgagacagctgttttcgcccttggtggactaggcgagatc
ggtaaaaacacatatggcgtacaatttcaagacgaaattattctaattgatgcaggaatc
aagttcccagaagacgaacttcttggtattgattatgttattcctgattacagttacctt
gtaaaaaacaaagacaagattaaaggactttttatcacccatggtcacgaagatcatatc
ggtggtgttccttacttacttcgcgagctaaacattccgatttatgctggaaaactcgca
agtgcacttatccgtaataaattagaagaacatggcttgcttcgtcaaacgaaaatttat
gaatatgaagaagatgacgtttttaaattcagaaaaacaagtatttctttcttccgcacg
acacatagtatccctgacacatatggtattgtggtaaaaacaccatctggtaatattgtt
catacaggagatttcaaatttgacttcacccctgttggcgaaccagctaacttaacaaaa
atggctgaaattggtaaagaaggcgttctttgtctattatccgatagtaccaatgcggaa
gttcctaattttacgatgagtgaacgtgttgtcggcgaaagcattaaaaatattttccgt
gatgtagaaggacgaatcatcttcgcaacttttgcatcgaacatctaccgcttacaacaa
gtagtagaatcttccatcgaaactggtcgtaaaattgccgttttcggtcgtagtatggaa
tctgccatggaaattggtaaacaattaggttatattcaagcaccaaaagacacgtttatt
gacgtgcatcaattaaacaaaactccggctggcaatgtgacgattctttgtactggaagt
caaggtgaaccaatggcagccctttctagaattgctaacggcacacatcgtcaaattcaa
attcaaccaggtgatacggtagtcttctcgtcttcccctattcctggtaatacaaccagt
gtcaatcgcaccattaatttactttatcaagctggagcagaagttatccacggtaaagta
aacaacatccatacttcaggtcatggtggccaacaagaacaaaaactaatgcttcgtcta
atgaaacctaaattctttatgccgattcacggtgagtttagaatgcaaaaaatccatgcc
caatcagcggaagagtgtggtgtaccagaagataatagctttattatggcaaatggtgat
gttcttgctttaacaagtgaaacagcccatgtagctggtaaaatccatgcagcaagtgtc
tatattgatggtagtggtattggtgatatcggtaatattgtccttcgtgatcgtcgtatt
ctttctgaagaaggtcttgttatcgttgttgtctctattaatatgaaaaattcacgtgtc
ctggctggccctgatatcatttcccgcggcttcatttatatgcgcgaatccggcaattta
attggagaagctcaaggtctcctaacgcgtcacttaaataaagtaatggaacaaaataca
acccaatggtctgaaatcaaaaatgaaattacagatacattgcaacctttcttatatgaa
aaaacgaaacgtcgtccgatgatattaccaattatcatggaagtatag
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