Listeria ivanovii subsp. ivanovii WSLC 3010: JL52_07965
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Entry
JL52_07965 CDS
T03400
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lii
Listeria ivanovii subsp. ivanovii WSLC 3010
Pathway
lii03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JL52_07965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lii03400
]
JL52_07965
Enzymes [BR:
lii01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
JL52_07965
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JL52_07965
DNA repair and recombination proteins [BR:
lii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JL52_07965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
AIS65499
LinkDB
All DBs
Position
complement(1635070..1635891)
Genome browser
AA seq
273 aa
AA seq
DB search
MPEMPEVENVRATLQNLVPGKKIDQVIVRVPKMIKNTPPDEFVHMLVGQQIEGVRRRGKF
LLFDLTNCTILSHLRMEGKFRLMNETDEVSKHTHIIFHFEDHTELRFLDVRKFGTMEVTN
KFGEVDTNSIKKLGPEPLTPTFTLEAFATGVKKTSRAIKTALLDQKLVAGIGNIYADEIC
FEAKVRPERAANSLSNKEIKLVFEATKSIMTEAVALGGSTVRTYVNSQGELGRYQEKLKV
YGRTGEPCVICGTPIEKIKLNGRGTHFCPNCQK
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaatgccggaagttgaaaatgtccgcgcaaccttacaaaatttagtcccaggt
aaaaaaattgatcaagtgattgttcgcgttcctaaaatgattaaaaatactccgccagat
gaatttgttcatatgctagtcggtcaacaaattgaaggagtgcgccgccgaggcaaattt
ttattatttgatttaacaaattgcaccattttgtctcatttacgtatggaaggtaagttc
aggctaatgaacgaaacagacgaagtgagtaaacatacccatattatttttcattttgaa
gatcacaccgaactgcgctttttagatgtacggaaattcggaacgatggaagtgacaaat
aaattcggggaagttgatacaaactcgataaaaaaactcggaccagagccattgactcct
acatttacgctagaggctttcgcaactggcgtgaaaaaaacaagccgcgcgataaaaacg
gctttacttgatcaaaaattagttgctggaattggaaatatttatgcggatgagatttgt
tttgaagcgaaagtacgtccagaaagagcagcaaattcgctttctaataaagaaattaaa
cttgtatttgaagcaacaaaaagtattatgacagaagctgttgcgcttggtggttccact
gtacgaacttatgtgaattcacaaggcgaattagggcgctaccaagaaaagttaaaagtt
tatggaagaacaggcgaaccatgtgtgatttgcgggacaccaatagaaaaaatcaagctt
aatggccgaggaacgcatttttgtcctaattgtcaaaaatag
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