Litorimonas sp. RW-G-Af-16: ACJ3XI_09105
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Entry
ACJ3XI_09105 CDS
T11560
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
Organism
lij Litorimonas sp. RW-G-Af-16
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
XLW28703
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All DBs
Position
complement(1923269..1927351)
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AA seq
1360 aa
AA seq
DB search
MSLTFTGKKRIRKSFGRIPEVVRMPNLIEVQKSSYDQFLQKSVPHDERGSDEGMNGVFNS
VFPVRDFSDRAVLEYVSFVFEQPKFDEEECQQRDITFAAPLKVKMRLVVFDIDEDTGAKS
VKDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKGHSSGKFLFS
ARIIPYRGSWLDFEFDAKDILYARIDRRRKLPATTILYALGMSREDILNHYYEAIEFKRD
SKKDGWTRAFNAEEYRGAKLLRAIVDAKTGKEVALAGRKLTKRGAKKLADDGLKTILISN
EEMSERFVAEDIVNMTTGQIYAEAGDELSLEIMEQINEANIKDISVLNIDHVNVGPYIRN
TLAADKNDSREGALVDIYRVMRPGEPPTSEAAEDLFNSLFFDQERYDLSAVGRVKMNLRM
DLDCSDEVRVLRNEDILAVVDTLVKLKDGIGAIDDIDNLGNRRVRSVGELMQNQYRIGLL
RMERAIKERMQSVDIETVMPHDLINAKPAAAVVREFFGSSQLSQFMDQTNPLSEITHKRR
LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIES
PYRKVVNAKLKDEVVYLSAMEEARYTVAQANAAINEKGEIADEFVTCRVNGDVTLIAREN
VDFIDVSPKQLVSVAAALIPFLENDDANRALMGSNMMRQAVPLLKAEAPLVGTGMESVVA
LDSGATVAAKREGIVEQVDAKRIVIRATKEADLSKSGVDIYNLLKFQRSNQSTCINQRPL
VNVGDEIKAGDIIADGPSTDLGELALGKNVLVAFMPWNGYNFEDSILISERIVRDDVYTS
LHIEEFSIMARDTKLGPEEITRDIPNIGEETLRNLDEAGIVAVGAEVHAGDILVGKVTPK
GESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGASGTVVEVRVFNRHGVDKDERAMQIER
EEIESLGKDRDDELSILERSIYASVQKTLMGKNAVSGPRGFNKGPVTEETLNDIPRSDWW
RIGVDDEKAIGELEALKEQYDNSKSRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKR
KLQPGDKMAGRHGNKGVISKINPVEDMPFLEDGQAVDIVLNPLGVPSRMNVGQILETHLG
WACAGVGKMIDQALEAYRAEGNMADLRAAVQHGYGDDETLPKKNNEIIELASNVTGGVPI
ATPVFDGAREADIVEMLQKAGLASSGQMTLHDGRTGERFTRQVTVGYKYLLKLHHLVDDK
IHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT
KVYESIVRGDDGFEAGIPESFNVLVKEIRSLGLNIELTNG
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgacttttactggcaagaaacgtattcgcaaaagctttggccgtattccggaa
gttgtccggatgccaaatctgattgaagttcagaaaagctcctacgatcaattcctccaa
aaatctgtcccacatgacgagcgcggctctgatgagggcatgaatggtgtgttcaactcg
gttttccctgtgcgggatttctcggatcgcgctgttttggaatatgtctccttcgtattt
gagcaaccaaagtttgatgaagaagagtgtcagcagcgcgacatcacgttcgcagcgccg
cttaaggtcaaaatgcgcttggttgtgttcgatattgatgaagacacaggtgccaaatct
gtcaaagacatcaaggaacaagacgtctatatgggcgatattcctttgatgacagacaaa
ggcacgttcatcgtgaacggcacagagcgcgtgatcgtgtctcaaatgcaccgttctcct
ggcgttttctttgaccatgataaaggcaagggccacagctctggcaagttcttgttctcc
gctcgtattatcccgtatcgcggatcttggctcgatttcgagtttgacgccaaagacatt
ctctatgcgcgtattgaccgtcgccggaaattaccagcgactacgattctttatgccttg
ggtatgtctcgcgaagacatcctgaaccattattatgaggcgattgagttcaagcgcgac
agtaagaaagatggctggacgcgggcgtttaacgctgaagaatatcgcggtgccaagcta
ttgcgggcaatcgttgatgccaagacaggtaaagaggtcgcactcgcgggccgtaaactg
acaaagcgcggcgccaagaaactggctgatgacggtctgaaaacgatcctgatttcaaat
gaggaaatgtcagagcgttttgtggcagaagacattgtcaacatgacaacaggtcaaatc
tacgccgaagcgggtgatgagttgtccttggaaatcatggagcaaatcaacgaagccaat
attaaagatatttctgtcctaaacatcgaccacgtcaatgttggcccttatatccgtaat
acactggcagcggacaagaacgattcgcgcgaaggcgctttggtcgatatttaccgcgtt
atgcgcccgggcgagccccccacatcagaggcagctgaagacctgttcaattctctgttc
tttgatcaagagcgttatgatctctcagcagttggtcgggtgaaaatgaacctccgcatg
gacctggattgttctgacgaagtgcgtgtgctgcgcaatgaggacattctggcagttgtg
gatacgctcgtaaaactcaaagacggcattggcgcgattgacgatattgataacctcggc
aaccgtcgtgtgcggtctgtcggtgagttgatgcaaaaccaataccgtattggtttgctg
cgtatggagcgcgccattaaagagcgtatgcagtctgtcgatattgagacagtcatgccg
catgatctgattaacgcgaaaccagcggctgctgttgtccgtgaattcttcggctcctcg
cagctctcgcagtttatggaccaaaccaacccgctctcagagatcacgcataagcgtcgc
ctctcagcgcttgggcctggtggtctgacgcgtgagcgtgctggctttgaagtccgcgat
gttcatccaacgcattatggtcgtatctgcccgattgaaacgccggaaggcccgaacatt
ggtctgattaactcgctcgctacacatgcgcgcgtgaacaaatatggcttcatcgagagc
ccttaccgtaaagttgtcaatgccaagctgaaagacgaagtcgtctatctgtctgctatg
gaagaggcccgctatacagtggcgcaagccaacgctgcgattaacgaaaaaggcgagatc
gcagatgaattcgtgacgtgtcgtgtgaacggcgatgtgacgttgattgcccgcgaaaat
gttgatttcattgacgtttcaccgaagcagcttgtgtctgtcgcggcggcgctgatcccg
ttcctcgaaaatgatgatgcgaaccgtgccttgatgggctccaacatgatgcgccaagct
gtgccgcttctaaaggccgaggcgcctttggtcgggacaggcatggaaagcgttgtggcg
ctcgactctggtgcgactgttgcggcgaagcgtgaaggtattgttgagcaagtggatgcg
aaacggatcgtgatccgcgcgaccaaggaagctgacctgagtaaatcaggcgtcgacatc
tataacctgctgaaattccagcgctccaaccagtcgacctgtatcaatcagcgtccactc
gtgaatgttggcgatgaaatcaaagccggcgatattatcgctgacggcccgtcgactgat
cttggcgagctggctctgggtaaaaacgtgctggtcgcgtttatgccttggaatggctat
aacttcgaagactcgatcttgatttccgagcgcatcgtgcgtgatgatgtctacacatca
ttgcacatcgaagagttctccatcatggcccgcgacacaaagcttggccctgaagagatc
acgcgggatattccaaatatcggcgaagaaacactccgtaaccttgatgaggctggtatt
gtggccgttggggcggaagtccatgccggcgatattctcgtcggtaaggtcacgccaaaa
ggtgaaagcccgatgacgccagaggaaaaactccttcgtgcgatctttggcgaaaaagcc
tctgacgtgcgcgatacatctttgaagctgcctccgggtgcgtcagggacagtcgtcgaa
gtccgtgtctttaaccgtcacggcgtcgacaaagacgaacgtgcgatgcaaatcgagcgt
gaagagatcgaaagccttggcaaagaccgtgatgatgagctgtctattctagagcgctcc
atctatgcgtctgttcagaaaacactgatgggcaagaacgctgtgtctggcccgcgtggt
tttaacaaaggtcctgtgaccgaagaaacgctcaacgacatcccgcgctccgattggtgg
cgcattggggttgacgacgaaaaagcgattggcgagttggaagcgctcaaagagcaatat
gacaactccaaatctcgtttggatgcccgtttcgaagataaggtcgacaagctgcaacgt
ggtgatgaactgccgccaggtgtgatgaagatggtcaaagtcttcgtcgcggtgaagcgg
aagcttcagccaggtgataaaatggcgggtcgtcacggcaacaaaggggtgatctccaag
atcaaccctgtcgaagacatgccattcctcgaagatggtcaggccgttgatatcgtgctg
aacccgctgggcgtgccgtcgcgcatgaacgtggggcagatcctcgaaactcatttgggt
tgggcctgtgcgggcgtcggcaaaatgattgaccaagcgctcgaagcctatcgggccgaa
ggcaatatggctgatcttcgcgccgctgttcaacatggctacggcgatgatgaaacgcta
ccaaagaaaaacaacgagatcatcgaactggcgtctaacgtcacgggcggtgtgccgatt
gcgacacctgtctttgatggtgcgcgagaagcggatatcgttgaaatgctacagaaagca
ggccttgctagctcgggtcagatgacacttcacgatggtcggacgggtgagcgtttcaca
cgtcaggttacggtcgggtataaatacctgctgaaattgcaccatctggtcgatgataag
atccatgctcgttcgattgggccatactccctcgtcacgcagcaacctctcggcggtaaa
gcccagtttggtggccagcgcttcggcgaaatggaagtctgggcccttgaagcttatggt
gcggcttatacgctacaggaaatgctgacggtcaagtcagatgacgtggcgggtcggacg
aaagtctacgagtcgattgtgcgcggtgatgatgggttcgaagctggtattccagaatcg
ttcaacgtcttggtcaaagagatcaggtcactgggtctgaatatcgagctgacgaacggc
taa
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