Litorimonas sp. RW-G-Af-16: ACJ3XI_11195
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Entry
ACJ3XI_11195 CDS
T11560
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lij Litorimonas sp. RW-G-Af-16
Pathway
lij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJ3XI_11195 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lij03021
]
ACJ3XI_11195 (rho)
03019 Messenger RNA biogenesis [BR:
lij03019
]
ACJ3XI_11195 (rho)
Transcription machinery [BR:
lij03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACJ3XI_11195 (rho)
Messenger RNA biogenesis [BR:
lij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACJ3XI_11195 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
AAA
ATPase_2
Fungal_virus_P2_C
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
XLW29098
LinkDB
All DBs
Position
2388821..2390119
Genome browser
AA seq
432 aa
AA seq
DB search
MTNLLDQDIEGMTAISLDDLKLLKPAELIKFAENVGVENAGSMRKQDIFFSILKDMAEGD
VQINGSGVLEVLQDGFGFLRAPDANYLPGPDDIYVSPQQIRRFGLRTGDTISGEIRSPKD
NERYFAMSKVVSLNFGTPEQARNKAHFDNLTPLYPDERFIMEIPDPTLKDNSGRVIDIVA
PIGKGQRALIVAPPRTGKTVLLQNIAHSIERNHPECYVLVLLIDERPEEVTDMQRSVKGE
VVSSTFDEPATRHVQVAEMVIQKAKRLTEHGKDVVILLDSITRLGRAYNTVVPSSGKVLT
GGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLD
RKVADKRIFPAIDVTKSGTRKEELLIPADELTKTYILRRILNPMGTMDAIEWLLSKLKDS
KNNSDFFDSMNT
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacctattagaccaagacattgaggggatgaccgccatcagccttgatgacctc
aaactcctcaaacctgcagaacttattaaattcgctgaaaatgttggcgtcgaaaatgct
ggttcgatgcgaaagcaagatatctttttctccattctcaaagatatggcagagggagat
gttcagattaacggctctggtgttttggaagtcctgcaagacggcttcggctttctgcgc
gcgccagacgctaactacctgccaggcccggacgatatttatgtcagcccgcaacaaatc
cgccgtttcggcttacggactggcgatacgatctctggcgagattcgcagccccaaagat
aatgagcgctatttcgccatgagcaaagtcgtgtcgcttaacttcggcacgccagagcaa
gctcgcaataaagcgcacttcgataatttaacaccgctatacccagacgaacgctttatc
atggaaattcctgatccaaccctgaaagataactcaggccgcgtgatcgacattgttgcg
ccgatcggtaagggacagcgtgctttgattgtggcgccgccgcggacaggtaaaacagtc
ctactccagaacattgcccactctatcgaacgtaatcaccccgaatgttatgttctggtc
ttgctcattgatgaacggcccgaagaggtgacggatatgcagcgctctgtgaaaggcgaa
gtcgtttcctcgacgtttgatgaacctgccacccgccacgtgcaggtcgcggaaatggtg
atccaaaaagcgaagcgcctgaccgaacacggtaaggatgttgtgattttgctcgactcg
atcacacgattaggccgggcatacaacacggttgtgccaagctctggtaaagtcctgacg
ggcggcgtggatgccaatgctctgcaacgtccaaagcgtttctttggtgccgcgcgaaat
atcgaagaaggcggatcgctgacaatcatcgcaacggctttgatcgacacaggctcccgg
atggacgaagtgatctttgaagaatttaaaggcacgggcaactcggaaatcgtgctagat
cgcaaggttgcagacaagcgcattttcccagcgattgacgttacaaagtcaggcacgcga
aaagaggagctgctgattccagcggatgaattgaccaagacctatattctgcgccgcatc
cttaatccaatgggaactatggatgcgattgaatggctgttgtctaagctgaaggattca
aagaacaattcagatttctttgacagcatgaatacttag
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