Leptospira interrogans serovar Lai 56601: LA_0040
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Entry
LA_0040 CDS
T00098
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lil
Leptospira interrogans serovar Lai 56601
Pathway
lil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA_0040 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lil03019
]
LA_0040 (vacB)
03016 Transfer RNA biogenesis [BR:
lil03016
]
LA_0040 (vacB)
Enzymes [BR:
lil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LA_0040 (vacB)
Messenger RNA biogenesis [BR:
lil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LA_0040 (vacB)
Transfer RNA biogenesis [BR:
lil03016
]
Prokaryotic type
tRNA degradation factors
LA_0040 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
AAN47239
UniProt:
Q8F9Z7
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All DBs
Position
I:41732..43978
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AA seq
748 aa
AA seq
DB search
MNIKKKQTTENKSVKSNRKKKTFDKTKKERTDGFRENEIGKKILKYIQSRAGSVIQFKDL
NAKILREENQNSYGKKREKWEFQEKEREILETLKILETEGLIELEKKNIIINSNQKLQGT
ISISKKGDGFVKLSSGVEIFVPNQYTQSAIQGDLVEVRPYGVGKKRRLEGEVTEILRRGR
DLYRMIVTEKEPKFIFGKLLDIDGEEKEGYLLRKTILTDLQEEIQSGDVLIVKLKEETEH
EKNLYEVQFLRFESDTKEDLDLMRMLMKYNYNILYPENIILDLPEEVNESTVDDWNERVD
LRNLKCITIDGEYSKDFDDAISFIEEKNRIRFYVHIADVSYYVRPGNDLDEEAYNRATSV
YLGSRVVPMLPPELSESLCSLIAGKNRLAFTVEMEADWKGKITHAKYYKSIINVKERYTY
NKAESEILSGDSDNWIFRMNEFAKILRTKRIEDGRVDLNLKENKVVTDSEHNVIEIAVQD
RLQSHILIEEFMLSANIKVAEYIRKKKHPTLYRVHEAMNEEKIESLNAFLQLNATKILLK
DSSYESIRSVLKELEAKPAERLFNMFLLRTFMQAYYSGEHLGHWGLGFEDYCHFTSPIRR
YPDLVCHRVLQNILLGKKPIYTPEEIVTFGLHCSHQERKASDAERDYYKLKACRYLEKTG
IKEFSATITGCRPHLIFVDLENPAVDACLFSSEFTDEGEIRLETDFSFYSKKYSKIYTLG
DKIEVELDRIDYEEIKIFVKMKKFQKKV
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgaatataaagaaaaaacaaacaacagaaaataaatctgtaaaatctaacagaaaaaag
aaaacgtttgataaaactaaaaaagaaagaaccgacggttttcgtgagaatgaaatagga
aaaaaaatcttaaagtatattcaatccagagcgggttctgtaattcaatttaaggatttg
aacgcgaaaattttaagagaagaaaatcaaaactcttacggtaaaaaaagggaaaaatgg
gagtttcaagaaaaagaaagggagatattggaaacattaaaaattcttgaaacagaagga
ttaatagaattagaaaaaaagaatattattatcaattcaaaccagaaacttcaaggaaca
atttctattagtaaaaaaggagacggttttgtaaaactttcttcgggagtcgagattttc
gttccaaatcaatatacacaatctgccattcaaggtgatttagtagaagttcgtccttac
ggagttggtaaaaagagaaggttagaaggagaagtcacggagattctcagaagagggcgc
gatctttatagaatgatcgtcaccgaaaaagagcctaagtttattttcggaaaacttttg
gatatagacggagaggaaaaggaaggttatcttcttcgtaaaacaattcttacggatctt
caagaggaaattcaatccggagacgttttgatagttaaattaaaagaagaaacggaacac
gaaaagaatctttatgaggtccagtttttacgttttgagtcagataccaaagaagatttg
gatctgatgagaatgttgatgaaatacaattataatattctttatcctgaaaatataata
ttagatcttcctgaagaagtgaacgaaagcactgtggacgattggaatgaacgtgtagat
cttaggaatctgaaatgtattacaatagacggagagtattccaaagattttgacgacgcg
attagttttatagaggaaaaaaatcgaattcgattttacgtacatatcgcggatgtttct
tattatgtaagaccgggaaacgatttagacgaagaagcatataatcgtgctacttctgta
tatttaggaagtcgggttgttcctatgttacctcccgagttatccgaaagtctttgttcc
ttgattgccggaaaaaatcgtttggcttttaccgtggaaatggaagctgattggaaagga
aaaattactcacgcaaaatattataaaagcataataaatgtaaaagaaagatatacttat
aacaaagccgagtcagaaatcttatctggggattctgataattggatttttagaatgaat
gaattcgccaaaattcttcgaacaaaaagaatcgaagatggaagagtggatttaaatttg
aaagaaaataaagtggtcactgattccgaacacaacgtgattgaaatagcggttcaagat
aggctccaatcgcatattctcatagaagaatttatgctttctgcaaatattaaagttgct
gaatatattcgtaagaaaaaacacccgactttatatagagttcatgaagccatgaatgaa
gaaaaaatagaatccttaaacgcatttcttcaattaaatgccactaaaattttactcaaa
gattctagttacgaatctattcgttcggttctaaaagaattagaagcaaaacctgcagaa
agattgtttaatatgtttttattgagaacatttatgcaggcttattattctggagaacat
ttaggacattggggtttgggatttgaagactactgtcattttacgtctccgattcgaaga
tatcctgatctggtttgccatagggttttacaaaatattcttttaggtaaaaagcctatt
tatactccggaagaaatagtgactttcggtttgcattgttcacatcaggaacgcaaagca
agtgatgcagaaagggattattataaacttaaggcatgtcgctatttggaaaaaactgga
attaaagaattttcagcaacgattactggttgtagaccacatttaatttttgtagatctg
gaaaatcctgctgtagatgcttgtttattttcttctgagtttacggatgaaggtgaaatt
cgtttagagacggacttttcattttactctaaaaagtattctaaaatttatactcttgga
gataaaattgaagtagaactggatcgaatcgactacgaagaaattaaaatctttgtaaaa
atgaaaaaattccaaaagaaagtatag
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