Leptospira interrogans serovar Lai 56601: LA_3419
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Entry
LA_3419 CDS
T00098
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lil
Leptospira interrogans serovar Lai 56601
Pathway
lil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LA_3419 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lil03021
]
LA_3419 (rpoC)
03400 DNA repair and recombination proteins [BR:
lil03400
]
LA_3419 (rpoC)
Enzymes [BR:
lil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LA_3419 (rpoC)
Transcription machinery [BR:
lil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LA_3419 (rpoC)
DNA repair and recombination proteins [BR:
lil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LA_3419 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AAN50617
UniProt:
Q8F0S3
LinkDB
All DBs
Position
I:complement(3383393..3387607)
Genome browser
AA seq
1404 aa
AA seq
DB search
MRSHNDFESITIRLASPERIKEWSYGEVKKPETINYRTLKPEKDGLFCEKIFGTTKDWEC
YCGKFKSIRYKGVVCDKCGVEVTHSKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDM
TVNQLKSVLYFEKYVIIDPADSGRNRGELIDEEEYHGYLDEYGDKFVAGIGADAIKELLA
RIDVDAEARMIRQKIQDKDKISDKRILKRLEVLEAFRDSGNRPEWMVLDIVPVIPPELRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLALKAPEIIVRNEKRMLQEAVDALFDNSR
RKRAVKGKGNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKYHEMGLPKK
MALELFKPFIMKRLVDLDLAPNIKSAKKKVEAEDKEVFDVLEYVVKEHPVMLNRAPTLHR
LGIQAFLPVLVEGKAIKLHPLVCHAFNADFDGDQMAIHVPLTPKAQLETWMLMLSPHNIL
NPANGHPICGPTQDIVLGIYYLTSELPSEPGVPLKSFSNLEEVHYAIDRGVVEFRTKISV
YHQGKILETTPGRLIFNTILPEGYAYVNRPLSDKETNRIIADVYDKYGPAKTVLMLDDIK
KLGYRYATLFAPTISIEDIRVSPGKVGLVGDANKEVEKADSEYRKGIITNEERRKKVIEI
WTKTNDLITESMFKELEKDKGGFNPVFIMAASGARGSKQQIRQLAGMRGLMAKPSGEIIE
LAIRSNFREGLSVLEFFISTHGARKGLADTALKTADAGYLTRRLVDISQDVIISEDDCGT
EESISLGVVKEGENVIVSLNDRVFGRYTAEDVIDPVTDQVVYPRNTLITREVGQKVENLG
YDKIRVRSPLTCESKQGVCIRCYGMDMARLIPAEIGEAVGTIAAQSIGQPGTQLTMRTFH
IGGAASAKVQEKEHKVSYTGIVNNINGRLITNEKSQSVFSRRGSIVIQRLIQQYKTEELS
NLRVENGQKVDKGELVATSPAGENITSEMPGTIHIENGLFRILGEEAVIPVKTGTIVNVK
VNDITQPNQPLAEFDPYNEVGISEIDGTVQWMDLEIGKNVRRDEDLRTSNILLKVIEQRR
EKLNPRIAVISGGSREEYSVPVDAIISVQDGDKVKAGDILFKIPTVAEKTRDITGGLPRV
DELFEARRPKDATTLAETDGKIEISGEIVKEKRVLYIHPDNPDLEKVKVTIPIGKQIRVR
NGDFVKRGDQIDDGNLDPHDILRVKGVTALQVYLVQEVQEVYRLQGVHINDKHIEVVVRQ
MLRKVLITDSGDTSFVNQQQIDRLVFNEENKRVIAEGGSPAESVPILLGLTKASLNTESF
FSAASFQETTKVLTDAAIKGKTDNLMGLKENVIIGHMIPAGTGTKKYKDIAVFKSAYGDL
DRPLEEEEEEEIPQAIAEESDAEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgagatcccataacgactttgaatcgattacaatccgcttagcatctcccgaaaggatc
aaagaatggtcctatggagaagttaaaaaaccagaaaccatcaactatcgtacgttaaag
cccgaaaaagatggccttttctgtgagaaaatttttggaaccacaaaggattgggaatgt
tactgcggtaagttcaagtccatccgttataaaggcgtggtctgcgataagtgcggagta
gaagtaactcactctaaggttcgtcgcgaaagaatgggtcacatagagctcgcggctcct
gtttctcatatctggtattaccgttccgttccttccagaatgggacttttactcgatatg
actgtgaaccaactcaagagtgttctctattttgaaaaatacgtcatcatcgatcctgcg
gattcgggtagaaaccgcggtgaacttatcgacgaagaagaataccacggttacctcgat
gagtacggagataagtttgtagctggaatcggcgcggacgcgatcaaagaacttctagcg
cgcattgacgtcgacgcggaagcgagaatgatccgtcaaaagatccaagacaaggataag
atttccgataaaagaattctgaaacgtctcgaagttctcgaagcgttccgtgactccgga
aaccgtccagaatggatggtgcttgatatcgttccagtcattcctcccgaactgcgcccg
atggttcagctcgaaggaggaagatttgctacttctgacttgaacgatttgtatcgccga
gttatcaatcgtaacaaccgtcttaagagacttctcgcgttaaaagctcccgagatcatc
gttcgtaacgaaaagagaatgttgcaggaagcggtagacgctctcttcgacaattcgaga
agaaaacgtgcggtaaaaggaaaaggaaaccgtcctttaaaatcgatctccgacatgctc
aaagggaaacaaggtcgtttccgtcaaaaccttctcggtaagagggtagattactccggt
cgttccgtgatcgtagtcggtcccgaactcaaataccacgagatgggacttcctaaaaaa
atggctttggaacttttcaaaccttttatcatgaaaagactcgtagacctagacttagca
cctaacattaaatctgcgaagaaaaaagtagaagctgaagacaaggaagttttcgacgta
ttggaatacgtagtcaaagaacatcccgtcatgttgaatcgtgcgccgaccttgcaccgt
ctcggaatccaggcgttcttgccggttcttgtggaaggaaaggcgatcaaacttcatcct
ctcgtttgtcatgcgttcaacgccgactttgacggggatcagatggcgatccacgttcca
ctgactccgaaagctcagttggaaacatggatgctcatgctttctcctcacaatattttg
aaccccgcgaacggacatccgatctgcggaccgactcaggatatcgtactcggaatttat
tatctaacttccgagcttccatccgagccgggagtccctctcaaatctttctcaaacttg
gaagaagttcactatgcgatcgacagaggtgtggttgaattcagaaccaagatcagcgtt
tatcaccaaggaaagattctcgaaacgactccggggagattgatcttcaataccattctt
cccgaaggatatgcatacgtaaacagaccactttctgataaggaaaccaaccggatcatc
gcggacgtttacgacaaatacggtcccgctaagactgtattgatgctcgacgacattaaa
aaattaggatatcgttatgcgactttgttcgctcctaccatctccatcgaagacattcga
gtgtctccaggtaaagtgggtcttgtaggcgacgcaaataaggaagtcgaaaaagcagac
tccgagtatcgcaaagggatcattacaaacgaagaacgtcgtaaaaaggtaatcgagatc
tggacaaaaacgaacgatctcatcaccgagtctatgttcaaggaactcgaaaaagacaaa
ggcggattcaaccccgtgtttattatggcggcttccggtgcgagaggatcgaaacaacaa
attcgccagctcgcgggaatgcgcggtctgatggcgaaaccttccggtgaaatcattgag
cttgcaattcgttcgaacttccgcgaaggactttcggttcttgaattctttatctctact
cacggtgcgagaaaaggtctcgcggatactgcgttaaaaactgcggatgcaggttactta
actcgtcgtcttgtggatatttctcaggacgtgattatctccgaagatgattgtggaacg
gaagaatctatttctcttggcgtcgtaaaagaaggggagaacgtgatcgtttccttgaac
gaccgcgtattcggacgttataccgcggaagacgtgatcgatcctgtgaccgaccaagtc
gtatatccgagaaacactttgatcacgagagaagtcgggcaaaaagtagaaaacctaggt
tatgataagatccgagttcgttctcctctgacttgtgaatctaaacaaggtgtttgtatc
cgttgttatggtatggacatggcgagactgatccctgcggaaatcggggaagcggtcgga
acgattgcggctcagtccattggccagcctggaactcagttgacgatgagaacgttccac
atcggtggtgcggcgtccgcaaaagttcaagaaaaagaacacaaggtttcttacacgggt
atcgtaaacaatatcaatggacgtttgattacaaatgaaaaatcacagagtgtgttctct
cgtcgtggttcgattgtaattcaaagattgattcagcaatacaaaaccgaagaactttcc
aacttacgcgttgaaaacggacagaaagtggacaagggagagttggtggcgacttctccg
gctggggaaaacatcacttctgaaatgccgggaactattcatatcgagaatggcctcttc
cgcatcttgggagaagaggctgtaattccagtaaaaaccggaacgatcgtaaacgtaaaa
gtaaacgacattacacagccgaaccagcctctcgccgagtttgacccttataacgaagtg
ggtatttccgaaatcgacggaaccgttcagtggatggatctcgagatcggtaagaacgtc
agaagagatgaagatttaagaacttctaatattcttctgaaagtgatcgaacaaagaagg
gaaaaactcaatccgaggatcgctgttatatctggtggttccagagaagaatattcagtt
ccagtggacgcaatcatttccgttcaagacggagacaaggtgaaagctggagacattctc
tttaagattcctacggtcgctgaaaaaactcgggatattactggtggtcttccaagagtt
gatgaactttttgaagcaagaagaccgaaagacgcgaccactctcgccgaaactgacggt
aagattgaaatcagcggtgagatcgttaaagaaaaacgagttctttatatccatccagac
aatccggatctggaaaaagtgaaagttacaattccgattggtaaacagattcgggttcgt
aacggagactttgtcaagagaggagaccagatcgacgacggtaatcttgatcctcacgac
attctcagagtaaaaggtgttaccgcacttcaagtgtatctcgttcaggaagtccaagag
gtttataggttgcaaggggttcatatcaacgataaacacatcgaagttgtggttcgtcag
atgcttagaaaagttctgattactgattcgggagatactagtttcgtaaaccaacagcaa
attgatagactcgtgttcaatgaagagaataagagagtaatcgcggaaggtggttctcct
gcggaatcggttccgattcttcttggattgacaaaggcttctttgaacacggaatccttc
ttctcggcggcttccttccaggaaaccaccaaggttcttacggatgcggcgatcaaaggt
aagactgataacttgatgggtctcaaagagaacgtcatcatcggtcatatgattcctgct
ggaactggaacgaagaagtataaggatattgctgtattcaaatctgcttatggagatttg
gatcgtcctttggaggaagaagaggaagaggaaattcctcaagcgattgctgaggaatcc
gacgcggaagaatag
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integrated database retrieval system
