Leptospira interrogans serovar Lai 56601: LA_3435
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Entry
LA_3435 CDS
T00098
Symbol
srmB
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
lil
Leptospira interrogans serovar Lai 56601
Pathway
lil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA_3435 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lil03019
]
LA_3435 (srmB)
Enzymes [BR:
lil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LA_3435 (srmB)
Messenger RNA biogenesis [BR:
lil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LA_3435 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrD-helicase
CMS1
Motif
Other DBs
NCBI-ProteinID:
AAN50633
UniProt:
Q8F0Q7
LinkDB
All DBs
Position
I:complement(3401324..3402946)
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AA seq
540 aa
AA seq
DB search
MKFEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVI
HNILTKGIQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQNKDLEG
LNGIIVATPGRLIDMIKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRKQTL
LYSATLSVEVMRLAYRFLNEPVEIQINPEKIITERIDQKIVHLGREEKIPYMTNLIINSK
EEGQGIIFTNYKANIPKIVYTLRKYGVPVTGISSELDQKKRLRLLRDFKSGKYRYMVATD
VASRGIDVENIDIVYNYDLPQDTENYVHRIGRTARAGRKGKAIGFCSESDYVELEKIEKY
LKQKIEILEVNEEYIQFPAGDFQSFIGGDSYDREKETHFKQNGKRPHDNDRAPHKHDRNR
KRDKRHTSHTHSTAKDSHKKKPAAAIQEAELFLQKADSVLSSEPKGKKSAKDQHRFQNKD
KQSRTGRGAQNSRNQNKNQQFGKQYDKNKRNLFDINDTVKEDTKKKKVSIWQKIKSIFGG
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagaactatccatccatccaaaattactttctgccattcaagaaatcgga
tatacggaactaactccgatccaagagaaatcgattccacatggattggaaggaaaagat
attaccggacttgcacaaaccggaaccggaaaaaccgtcgcgtttttaattcctgtcatt
cataacattctaaccaaaggaatacaaggaattgcagcgctcgtattagctcccacaaga
gaacttacgatgcagatcgcggaagaggcaaaaaaattactcaaacattccgaaggaatc
cgatcagtcccgattataggaggaaccgattacaagtcccaaaataaggatttagaagga
ttaaacggaattatcgtcgctactcccggaagattgatcgatatgattaagtctggttct
attgatatatcgaacgtagaattttttgtactcgatgaagcggatcgaatgttggatatg
ggatttatccaagacatccgttggcttttacataagtgtaagaatcggaaacagaccttg
ttgtattccgctactttgtctgtggaagtgatgaggctcgcctatcgtttcttaaacgaa
ccagtagaaattcaaatcaatcctgaaaagattatcaccgaaagaattgatcagaaaatt
gttcatttgggaagagaagaaaaaattccttatatgaccaatctaatcataaactcaaaa
gaagaaggtcaagggatcatattcacaaattataaagcgaatattccaaaaattgtatat
actctccgtaaatatggggttccagtaaccggaatatcttccgaattggatcagaaaaaa
agacttagacttctccgagattttaaatccggaaaatacagatacatggtcgcaaccgac
gtcgcttccagaggaattgacgtagaaaatatagatatcgtctataattacgatcttcct
caggataccgaaaattacgtacacagaatcggtagaactgcacgggcgggaagaaaagga
aaagcgattggtttttgttccgaatcagattacgtggaactagaaaagatagaaaaatat
ctaaaacaaaagatcgaaattttagaagtaaacgaagaatatattcagtttcctgcaggt
gattttcaatcttttatcggaggggattcttacgatcgagaaaaagaaactcattttaaa
caaaatgggaaacgtcctcacgacaacgatcgtgccccacataaacacgatcgaaatcgc
aaaagggataaacgacatacaagtcatacacattctaccgcgaaagattctcacaagaaa
aaaccagctgctgcaatccaagaagcagagttatttttgcaaaaggcggattccgtttta
tcctcagaaccgaaaggaaaaaaatctgcaaaagaccaacatagatttcagaacaaagac
aaacagagccgaacggggcgtggtgcacagaatagtcgaaatcagaataaaaatcaacag
ttcggtaaacaatacgataaaaacaaacggaatctattcgatataaacgatacggtaaaa
gaagatactaaaaagaaaaaggtttcgatttggcaaaaaatcaaatctatctttgggggc
tga
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