KEGG   Limnohabitans sp. 103DPR2: L103DPR2_00119
Entry
L103DPR2_00119    CDS       T04120                                 
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
  KO
K02340  DNA polymerase III subunit delta [EC:2.7.7.7]
Organism
lim  Limnohabitans sp. 103DPR2
Pathway
lim03030  DNA replication
lim03430  Mismatch repair
lim03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    L103DPR2_00119 (holA)
   03430 Mismatch repair
    L103DPR2_00119 (holA)
   03440 Homologous recombination
    L103DPR2_00119 (holA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lim03032]
    L103DPR2_00119 (holA)
   03400 DNA repair and recombination proteins [BR:lim03400]
    L103DPR2_00119 (holA)
Enzymes [BR:lim01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     L103DPR2_00119 (holA)
DNA replication proteins [BR:lim03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     L103DPR2_00119 (holA)
DNA repair and recombination proteins [BR:lim03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     L103DPR2_00119 (holA)
SSDB
Motif
Pfam: DNA_pol3_delta DNA_pol3_delt_C DNA_pol3_delta_C
Other DBs
NCBI-ProteinID: ALK90533
UniProt: A0A0P0LN80
LinkDB
Position
complement(146662..147717)
AA seq 351 aa
MQLALPQIQAHLQKGLRSLYTLHGDEALLVQEAADAIRAAARSQGFTERSVHVVSGAHFD
WSEVLAAGGSMSLFADKQLLEIRIPTGKPGKEGSPMIQQLAQTAEGNDSTLTLFILPRLD
NATKKGAWFGALDQYGVTVQIDSLDRAQLPQWIAQRLKLQGQSVVAGQDGQNCLQFFADR
VEGNLLAAHQEIQKLGLLYPAGELTQSQVESAVLNVARYDVFKLSESVLSGQVARVQRML
DGLQAEGEAAVLVHYTLAEDIRALKRVKDAMAEGKPLPMALREQRIWGVREKQFERVLPR
LSASRLAQLLQNAHQVDGIVKGLKVADWPTDPWQALHRLALRVASACAAKN
NT seq 1056 nt   +upstreamnt  +downstreamnt
atgcaactggccctgcctcaaatccaagcgcatttgcaaaaaggtttgcgcagcttgtac
accttgcatggcgatgaggccctgttggtgcaagaggccgcagacgccattcgcgccgca
gcacgcagccaaggctttaccgagcgcagtgtgcatgtggtgtcgggtgcgcactttgat
tggagtgaagtgttggcagccggcggctcgatgagcttgtttgccgacaagcaactgttg
gagattcgcattcccacgggcaagcctggcaaagaaggcagccccatgattcagcagctg
gcacaaaccgcagaaggcaatgacagcaccttgaccttgttcatcttgccgcgattggac
aatgccaccaagaaaggtgcttggtttggtgcactcgatcagtacggcgtcacggtgcag
attgattcactcgaccgtgcgcagttgccgcaatggattgcgcagcgcttgaagttgcaa
gggcaaagcgtggtggcaggccaagatggccaaaattgtttgcaattttttgccgaccgt
gttgagggcaacttgttggcggcccaccaagaaattcaaaaactgggattgctgtatccg
gcaggcgagctgacgcagtcccaagttgaaagcgccgtgctcaatgtggcgcgctacgat
gtgttcaaactctcagagtcggtgttgtcggggcaagtggcacgtgtgcagcgcatgctc
gatggcttacaagctgaaggcgaagctgcggtgttggtgcactacaccttggccgaagac
attcgagcgcttaagcgcgtcaaagacgcgatggccgaaggaaagcccttgcccatggcc
ttgcgcgagcaacgcatttggggcgttcgcgaaaaacaatttgagcgggtcttgccacgt
ttgtcggccagccgcctggcgcaattgctgcaaaacgcccaccaagtggatggcattgtc
aaaggtttgaaagtagcagattggcctaccgacccctggcaagcattgcaccgtctggcc
ttgcgcgtagccagcgcttgtgctgccaaaaactaa

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