Entry |
|
Symbol |
holA
|
Name |
(GenBank) DNA polymerase III subunit delta
|
KO |
|
Organism |
lim Limnohabitans sp. 103DPR2
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:lim00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L103DPR2_00119 (holA)
03430 Mismatch repair
L103DPR2_00119 (holA)
03440 Homologous recombination
L103DPR2_00119 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:lim03032]
L103DPR2_00119 (holA)
03400 DNA repair and recombination proteins [BR:lim03400]
L103DPR2_00119 (holA)
Enzymes [BR:lim01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L103DPR2_00119 (holA)
DNA replication proteins [BR:lim03032]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
L103DPR2_00119 (holA)
DNA repair and recombination proteins [BR:lim03400]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
L103DPR2_00119 (holA)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(146662..147717)
|
AA seq |
351 aa
MQLALPQIQAHLQKGLRSLYTLHGDEALLVQEAADAIRAAARSQGFTERSVHVVSGAHFD
WSEVLAAGGSMSLFADKQLLEIRIPTGKPGKEGSPMIQQLAQTAEGNDSTLTLFILPRLD
NATKKGAWFGALDQYGVTVQIDSLDRAQLPQWIAQRLKLQGQSVVAGQDGQNCLQFFADR
VEGNLLAAHQEIQKLGLLYPAGELTQSQVESAVLNVARYDVFKLSESVLSGQVARVQRML
DGLQAEGEAAVLVHYTLAEDIRALKRVKDAMAEGKPLPMALREQRIWGVREKQFERVLPR
LSASRLAQLLQNAHQVDGIVKGLKVADWPTDPWQALHRLALRVASACAAKN |
NT seq |
1056 nt +upstreamnt +downstreamnt
atgcaactggccctgcctcaaatccaagcgcatttgcaaaaaggtttgcgcagcttgtac
accttgcatggcgatgaggccctgttggtgcaagaggccgcagacgccattcgcgccgca
gcacgcagccaaggctttaccgagcgcagtgtgcatgtggtgtcgggtgcgcactttgat
tggagtgaagtgttggcagccggcggctcgatgagcttgtttgccgacaagcaactgttg
gagattcgcattcccacgggcaagcctggcaaagaaggcagccccatgattcagcagctg
gcacaaaccgcagaaggcaatgacagcaccttgaccttgttcatcttgccgcgattggac
aatgccaccaagaaaggtgcttggtttggtgcactcgatcagtacggcgtcacggtgcag
attgattcactcgaccgtgcgcagttgccgcaatggattgcgcagcgcttgaagttgcaa
gggcaaagcgtggtggcaggccaagatggccaaaattgtttgcaattttttgccgaccgt
gttgagggcaacttgttggcggcccaccaagaaattcaaaaactgggattgctgtatccg
gcaggcgagctgacgcagtcccaagttgaaagcgccgtgctcaatgtggcgcgctacgat
gtgttcaaactctcagagtcggtgttgtcggggcaagtggcacgtgtgcagcgcatgctc
gatggcttacaagctgaaggcgaagctgcggtgttggtgcactacaccttggccgaagac
attcgagcgcttaagcgcgtcaaagacgcgatggccgaaggaaagcccttgcccatggcc
ttgcgcgagcaacgcatttggggcgttcgcgaaaaacaatttgagcgggtcttgccacgt
ttgtcggccagccgcctggcgcaattgctgcaaaacgcccaccaagtggatggcattgtc
aaaggtttgaaagtagcagattggcctaccgacccctggcaagcattgcaccgtctggcc
ttgcgcgtagccagcgcttgtgctgccaaaaactaa |