Limnohabitans sp. 103DPR2: L103DPR2_00323
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Entry
L103DPR2_00323 CDS
T04120
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L103DPR2_00323 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lim03019
]
L103DPR2_00323 (recQ)
03400 DNA repair and recombination proteins [BR:
lim03400
]
L103DPR2_00323 (recQ)
Enzymes [BR:
lim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L103DPR2_00323 (recQ)
Messenger RNA biogenesis [BR:
lim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L103DPR2_00323 (recQ)
DNA repair and recombination proteins [BR:
lim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L103DPR2_00323 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
RtcB
Motif
Other DBs
NCBI-ProteinID:
ALK90737
UniProt:
A0A0P0MCZ6
LinkDB
All DBs
Position
complement(367983..369848)
Genome browser
AA seq
621 aa
AA seq
DB search
MTSSVLSTPSSNILRILSEVFGYESFRGPQQDIISHVTGGHDALVLMPTGGGKSLCYQIP
AIARQQAGLGIAIVVSPLIALMHDQVGALHEAGVSAAFLNSTLSPDETSVIEQRLRKGDI
TLLYAAPERINTPRFLAQLDSLYAQGLLSLFAIDEAHCVSQWGHDFRPEYRSLTVLHERF
PGVPRVALTATADALTRADIIERLQLEEAQLFISSFDRPNIRYTIVEKKDASTQLLRFIE
REHEGEAGIVYCQSRKRVEEVAEMLAQTGIDALPYHAGLDAALRQKHQDRFLRDEGVVMV
ATIAFGMGIDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGLRADAWMAYGLQDVVNQRRM
IDESPAEENFKQVMRGKLDALLALAEATDCRRVRLLSYFDEASQPCGNCDNCLNPPAVWD
GTDAARKLLSTVFRAQQHSGFSFGAGHIMDILRGKATEKVTQYGHTQLSTFGIGANFSEI
QLRGVLRQLIAMGALNVQGQVFNTLQLTEGSRAVLKGEVSVQLRESLSQKPEKRSRKPQA
PGPAAANLSQDALVRYINLKAWRAEVAKEHNLPAYVIFHDATLAAIAAASPQNLEDLHGI
SGLGAKKLEAYGQEVLRICKG
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
gtgacaagctctgttttatccacgccctctagcaacatcctgcgcattctcagtgaggtg
tttggctacgagtcgttcagaggcccccagcaagacatcatctcgcatgtcaccggcgga
cacgatgccttggttctcatgccaactggcggcggcaaaagtttgtgttaccaaattccc
gccattgccaggcagcaagctggcttgggcatcgccattgtggtgtcgccgctcattgcg
ctcatgcacgatcaagtgggcgcattgcatgaggcgggtgtcagtgccgcatttttaaac
tccacgctcagcccagacgaaaccagtgtcatcgaacaacgcttgcgcaaaggcgacatc
acgcttttgtatgctgccccagagcgcatcaacacaccccgctttttggcacaactcgat
tcgctgtatgcccaaggccttctcagtttgtttgccattgacgaagcgcattgcgtcagc
caatggggccacgatttccgcccagagtaccgcagccttacggtcttgcatgaacgtttt
ccaggtgtaccgcgggttgccttaacggccacggccgacgccctcacacgtgcagacatc
attgaaagactgcaacttgaagaagcccaactcttcatcagcagcttcgatcgccccaac
attcgctacaccatcgtcgagaaaaaagatgcgtctacccaactgctgcgattcatcgag
cgcgagcacgaaggtgaggctggcattgtgtattgccagtcacgcaaacgggttgaagaa
gtggccgagatgttggcccaaaccggcatcgatgccctgccgtatcacgccggcctagac
gcggccctgaggcaaaaacaccaagaccgttttttgcgcgacgaaggtgttgtcatggtg
gccaccattgcatttggcatgggcatcgacaaaccggatgttcgatttgtggcgcatctg
gacatgcccaaaaacatcgaaggctattaccaagaaacaggccgtgcagggcgcgacggt
ttgcgtgcagatgcctggatggcgtatggtttgcaagatgtggtgaaccaacgccgcatg
atcgatgaaagtcctgccgaagaaaacttcaagcaagtcatgcgcggcaaattggatgcc
ttgttggcattggccgaagccaccgattgcagacgtgttcgcttgctgtcttattttgat
gaagccagccagccctgtggcaattgcgacaactgtttgaacccacccgccgtttgggat
ggcaccgatgcagcccgtaaattgctctccaccgttttccgcgctcaacaacacagtggt
ttttcttttggcgctggtcacatcatggacatcttgcggggcaaggccaccgaaaaggtc
acgcaatacgggcatacccaactcagcacctttggcatcggcgccaacttcagcgaaatt
caattgcgcggcgttttacgccaactgattgccatgggtgctttgaatgtgcaaggacag
gtctttaacaccctgcaactcaccgaaggctcacgtgcggttctgaaaggggaggtcagt
gtgcagttgcgtgagtctttaagccaaaaacccgaaaaacgcagccgcaaacctcaggcc
cctggcccagcggccgctaacctcagtcaagacgccttggtgcgctacatcaacctcaaa
gcatggcgggccgaagtggccaaagaacacaacttgccagcctatgtcatttttcacgat
gccactttggcagccattgctgcagcttcaccccaaaacctcgaagacctgcatggcatc
agcggcctgggcgctaaaaagctggaagcctacggtcaagaggtcttgagaatctgcaaa
ggctaa
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