Limnohabitans sp. 103DPR2: L103DPR2_00397
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Entry
L103DPR2_00397 CDS
T04120
Symbol
spoVD
Name
(GenBank) Stage V sporulation protein D
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim00550
Peptidoglycan biosynthesis
lim01100
Metabolic pathways
lim01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
L103DPR2_00397 (spoVD)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
L103DPR2_00397 (spoVD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
lim01011
]
L103DPR2_00397 (spoVD)
Enzymes [BR:
lim01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
L103DPR2_00397 (spoVD)
Peptidoglycan biosynthesis and degradation proteins [BR:
lim01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
L103DPR2_00397 (spoVD)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
bDLD3
PBP_dimer_2
Motif
Other DBs
NCBI-ProteinID:
ALK90810
UniProt:
A0A0P0MD61
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All DBs
Position
complement(433354..435348)
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AA seq
664 aa
AA seq
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MALHLPSLSELRNTEFEIFKFQTRVMVLQGVVLLCFALLGIRLFYLQVIRHEDLLEQAEN
NRTAILPTVPNRGTIMDRNGVVLANNYSAYTLEITPSRVKDLEATIDSLSEIIDIPLRDR
RRFKRMREESKNFDSLPIRSRLTEEEVAKFSAQHYRFPGVEIKARLFRNYPYGHLASHVV
GYIGRINQKEKEQIEESDDEGNYRGTQYIGKLGVEQRYERELHGITGVQEVETSAGGKAV
RRLASRPATPGQNVVLSLDIKLQKMVEDLFGDRRGALVAMDPRTGEVLAFVSKPTFDPNL
FVDGIDSESWKALSESIDKPLLNRAIRGTYPPGSTYKPFMALAALETGKRSASEIINDQG
SWNYGGHTFRSHGDTGLGPVDMVRSIVLSSNVYYYSLANTMGVDAIHDFMKPLGFGQITG
IDLPGEVRGVLPSTQWKKNTYKKAEQQRWYGGETISLGIGQGYNAFTMLQLATATATLAN
GGVVRKPRLVMATQDPIARVDRSVAGEAPLNLGFKPENVAVVKQGLIGVAKEGTSARVFA
GTPYQSAGKTGTAQAVTIGQKDKYNASKLEEHQRDHALYMAFAPADEPQIALAIVVENAG
FGAAQAAPIARRVFDYWLLGDYPSIEDIEASQKGLAASPVGVRRRKEDILLTPSEGVVGV
MGNR
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgcacctgccctcgttaagcgagttgcgcaacaccgagtttgagattttcaaa
tttcaaacgcgcgtgatggtgctgcaaggcgtggtgcttttgtgttttgctttgttgggc
atccgcctgttttatttgcaagtcattcggcacgaagacttgttagagcaagcagaaaac
aatcgcaccgccatcttgcccacagtgcccaatcgcggcacgatcatggaccgcaatggc
gttgtgttggccaacaactactcggcctacacactcgaaatcacaccttcacgcgtgaag
gacctcgaagccaccatcgacagtttgtctgaaatcatcgacatcccactgcgcgatcgt
cgtcgcttcaaacgcatgcgagaagagtctaagaactttgactcactgcccattcgttca
cgtctcacagaagaagaagtggccaagttctctgcgcagcattaccgctttccgggtgtt
gaaatcaaagcgcgtttgttccgcaactacccctatggtcatttggccagccacgtggtg
ggctacatcggccgcatcaaccaaaaagaaaaagaacaaattgaagagagcgatgacgaa
ggcaactaccgcggtacccaatacatcggcaagttaggcgtagaacaacgctacgagcga
gaactgcatggcatcaccggtgtgcaagaagtcgaaacctcggcaggcggcaaagccgtg
cggcgactggccagcagacccgccacgcctggccaaaacgtggtgctgtcactcgacatc
aaattgcaaaagatggtggaagacttgttcggcgatcgtcgcggtgctttggtggccatg
gacccacgcaccggcgaagttttagccttcgtcagcaagcccaccttcgatcccaattta
tttgtcgatggcatcgacagtgaaagctggaaagccttgagtgagtcgatcgacaagcct
ctgctgaaccgggccattcgcggcacttacccaccggggtccacctacaaacccttcatg
gccttagcggcactcgaaacaggcaaacgcagcgccagcgaaatcatcaacgaccaaggc
tcgtggaactacggcggtcacacctttcgaagccacggcgatacaggccttgggcctgtt
gacatggttcgctccattgtgttgtccagcaatgtgtactactactcattggccaatacc
atgggcgtggatgccattcacgacttcatgaagcctttgggttttggtcaaatcacaggc
atcgatttaccaggtgaagtgcgcggcgtcttgccaagcacccaatggaaaaagaacacc
tacaagaaagccgagcaacaacgttggtacggcggtgaaaccatctccctgggcattggc
caaggttacaacgccttcaccatgctgcaattggccacggcaacggccaccttggccaat
ggcggggtggtgcgcaaacctcgcttggtcatggccacacaagaccccattgcacgtgta
gaccgaagtgtggccggtgaggcgcctctcaacttaggcttcaagcctgagaatgtggct
gtggtgaaacagggtttgattggcgtggccaaagaaggcacctctgccagagtgtttgcg
ggcacaccctaccaaagtgcgggcaaaaccggcaccgcacaagccgtcaccattggccaa
aaagacaagtacaacgccagcaaattggaagagcatcagcgtgaccacgccttgtacatg
gcctttgcaccagctgatgaaccgcaaattgccttggccattgtggtggaaaacgccggc
tttggtgctgcccaagccgcgcccattgccagacgtgtttttgactattggctattaggc
gactaccccagcatcgaagacattgaagcctcgcaaaaaggtttggccgcatcacctgtg
ggcgtgcgcaggcgaaaagaagacatcttgttgacacccagtgaaggggtggtcggcgtg
atgggcaaccgataa
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