Limnohabitans sp. 103DPR2: L103DPR2_00479
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Entry
L103DPR2_00479 CDS
T04120
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L103DPR2_00479 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lim03021
]
L103DPR2_00479 (rpoA)
03400 DNA repair and recombination proteins [BR:
lim03400
]
L103DPR2_00479 (rpoA)
Enzymes [BR:
lim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L103DPR2_00479 (rpoA)
Transcription machinery [BR:
lim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L103DPR2_00479 (rpoA)
DNA repair and recombination proteins [BR:
lim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L103DPR2_00479 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
ALK90892
UniProt:
A0A0P0MD01
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All DBs
Position
504478..505470
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AA seq
330 aa
AA seq
DB search
MQTNLLKPKAIQVEQLGPNRAKVTLEPFERGYGHTLGNALRRVLLSSMVGYSATEVTIAG
VVHEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGPVTAADIQTPHDVEI
INPEHVIANLSQGGKLDMQIKVEKGRGYVPGSMRRFADEPTKSVGRIVLDASFSPVKRVS
YTVESARVEQRTDLDKLVIEMETNGAISAEDAVRSSAKILVEQLAVFAQLEGSELSAFDA
PAQRGGASSFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKS
LNEIKEVLASRGLTLGMKLESWPPAGLEKR
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaatctgttgaaacccaaagccatccaagttgaacaactcggccccaaccgc
gccaaggtgaccttggagcccttcgagcgtggctatggccataccttgggcaacgcgctg
cgccgtgtgttgttgtcttctatggtgggttattccgctacggaagtcaccatcgctggt
gttgttcacgagtactcatccattgatggtgtgcaagaagatgtcgtcaacatcttgttg
aacctcaaaggtgtggtcttcaaattgcacaaccgcgatgaagtgacattgagcctgcgc
aaagatggcgaaggtcctgtcacagcggccgatatccaaacaccgcacgacgttgaaatc
atcaaccccgagcacgtcattgccaacctgtcacaaggtggcaaactcgacatgcaaatc
aaggttgaaaaaggccgtggctatgtgccaggttcgatgcgccgttttgccgatgagccc
actaaatctgtgggtcgcattgttctcgatgcctctttctcacctgtgaagcgcgttagc
tacacagtcgaaagcgcacgtgttgagcagcgtaccgacctcgacaagttggtcatcgaa
atggaaaccaacggtgccatcagcgctgaagatgccgttcgctcttctgccaagatcttg
gtggagcaattggctgtgttcgcacagctcgaaggcagcgagttgtctgcattcgacgca
cccgcacaacgcggcggcgccagcagcttcgatcctattttgctgcgcccagtggacgag
ctcgaactcaccgttcgctctgccaactgcctcaaagcagaaaacatttactacatcggc
gacctgattcagcgcaccgagaacgaattgctcaagacccctaacttgggtcgcaagtca
ctcaacgagatcaaagaagttttggcctcacgcggtttgactttgggcatgaagctcgag
agctggccacctgctggtttggaaaagcgttaa
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