Limnohabitans sp. 103DPR2: L103DPR2_00554
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Entry
L103DPR2_00554 CDS
T04120
Symbol
ntrC
Name
(GenBank) Nitrogen assimilation regulatory protein
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim02020
Two-component system
lim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
L103DPR2_00554 (ntrC)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L103DPR2_00554 (ntrC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lim03000
]
L103DPR2_00554 (ntrC)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
lim02035
]
L103DPR2_00554 (ntrC)
Transcription factors [BR:
lim03000
]
Prokaryotic type
Helix-turn-helix
Other families
L103DPR2_00554 (ntrC)
Bacterial motility proteins [BR:
lim02035
]
Flagellar system
Flagellar assembly proteins
Others
L103DPR2_00554 (ntrC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
AAA
HTH_50
AAA_2
AAA_22
AAA_30
HTH_30
AAA_7
CUE
nSTAND3
APS_kinase
TIP49
Motif
Other DBs
NCBI-ProteinID:
ALK90961
UniProt:
A0A0P0MD79
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Position
580222..581412
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AA seq
396 aa
AA seq
DB search
MAKKSLSKAFIGASAGAEAIRHLIERVASSTATVLITGESGTGKELVARALHDQSDRSGG
NFVPINCAAIPKDLLESELFGHRKGAFTGAMADRIGRFELAHGGTIFLDEIGDLSLDMQV
KLLRVLQERTVDPVGGLKSVEVDVRVVAATHRDLEAEIEAGRFREDLYYRLNVLPLNTPA
LRQRAQDVPALLAHFAELFATKGQTPITFTADFIEALKDYAWPGNVRELSNLVDRFNTLF
SGQLLSLASVPSSLLPKGLRTLQAERVSTPIVDSLEIVAPLSSKELHQSANAEVMNPFAN
PAPPLAMDMHNEVEDIIMLAQGLPSLPPEGLSLKDRLADIERDLIVQALNRTDGNVSQTA
RLLNLQRTTLIEKLNKYDLRQGTLPVAGNEDDKKTA
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaaaagtctttccaaagcttttattggcgccagtgctggcgctgaggccatt
cggcatttgatcgaacgggtggcttcgtccacggccaccgtgctcattaccggcgaaagt
ggcacaggcaaggagttggtggcccgtgctttgcacgaccagtccgaccgaagtggcgga
aattttgtccccatcaattgcgcagccatccccaaagatttgctcgaaagcgaattgttt
ggccaccgcaaaggcgctttcacaggcgccatggccgatcgcattggccgttttgagttg
gcccatggcggcaccatctttttagacgagattggcgatctgtctttggacatgcaggtc
aaactgctgcgcgtcttgcaagaacgcaccgtcgatccggtaggcggtttgaaatctgtg
gaagtggatgtgcgcgtggtcgctgccacccaccgcgacttggaagccgaaattgaagcc
gggcggtttcgggaagacttgtattaccgcctgaacgtgctgcccttgaacacgcccgct
ttgcgtcaaagagcgcaagatgtaccggccttgctggcgcatttcgcggaactctttgcc
accaaaggccagacccccatcacgtttacagcggatttcattgaagccctcaaggactat
gcgtggcctggcaatgtgcgcgagttgtccaacttggtggaccggttcaataccttgttc
agtggtcagttgctcagcttggcatcggtgccttcgtccttgttgcccaaggggttgcgt
actttgcaagctgaacgggtcagcacccctattgtcgattccttggaaattgtggcgccc
ttaagctccaaagagttgcaccaaagtgccaatgccgaagtgatgaacccctttgccaat
cctgcgccgcccttggccatggacatgcacaacgaggtggaagacatcatcatgctggcg
cagggcttgcccagtttgccgcccgaggggctttccttgaaagaccgcttggcagacatc
gagcgcgacttgattgtgcaagcactcaatcgcaccgatggcaatgtgtcgcaaacagct
cgcttgctgaatttgcagcgtaccaccctgattgaaaaactcaacaagtacgacttgcgt
caaggcaccttgcccgttgcaggcaacgaagacgataaaaaaaccgcttga
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