Limnohabitans sp. 103DPR2: L103DPR2_01178
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Entry
L103DPR2_01178 CDS
T04120
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L103DPR2_01178 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lim03019
]
L103DPR2_01178 (rhlE_1)
Enzymes [BR:
lim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L103DPR2_01178 (rhlE_1)
Messenger RNA biogenesis [BR:
lim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L103DPR2_01178 (rhlE_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALK91580
UniProt:
A0A0P0MEW9
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All DBs
Position
1184877..1186358
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AA seq
493 aa
AA seq
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MTASFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP
LLQRLLKHENTSTSPARHPVRALVLLPTRELADQVAQQIKMYAKYTQMRSAVVFGGMDMK
PQTLELKKGVEILVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSF
LPKQRTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFYAAQDDDKRRVV
KAVLNQRGIKQAFIFVNSKLGCGRLARSLEREGLKTAALHGDKSQDERLKALEAFKKGEV
DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSPSDMRL
VADIEKLIKNKLEVETYPLENEGSRNHFGEGRRDERRPEGRGERRDERREDRRPERGFER
RREEEGDRRSSFRPAQVSRDPFFEKPYEAQEPALAQSGPASWEATPKSVAARPGLSANIK
PKRKVAALFKSGE
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatctttttcaaatctatcgctggctgaaccgctggcacgtgccgtagccgaa
atgggctacgaatccatgacccccattcaagctcaggccattcctgtggttttgactggg
aaagacgtgatgggcgctgcgcaaacaggtaccggtaaaaccgctgctttttcgctgccg
ctgcttcagcgtttgctcaagcacgaaaacacatccacctcgcccgcacgtcaccctgtg
cgcgccttggtactcttgcccacgcgcgaattggccgatcaggtggcgcaacaaattaag
atgtacgccaagtacacacagatgcgcagcgctgtggtgttcggcggcatggacatgaag
ccccaaaccctcgagcttaaaaaaggcgttgagattttggtggccacaccaggccgattg
ctcgatcacatcgaagccaaaaacgcggtgctcaatcaagttgaatatgtggtgctcgat
gaagccgaccgtatgctcgacattggcttcttgccagacctgcaacgcatcttgagtttc
ttgcccaagcagcgcaccacgctgttgttctcggccacgttctcgcccgaaatcaagcgc
ttggccggcagctacctgcaggaccccatcaccattgaggtcgcccgtcccaacgaaaca
gcatcgaccgtcgagcagcgtttttacgcagcccaagacgatgacaaacgtcgtgtcgtt
aaagcagttttgaatcagcgcggcatcaagcaagccttcatttttgtgaacagcaaattg
ggttgtggtcgcttggcgcgatcactcgaacgtgagggtctcaaaaccgctgcattgcac
ggtgacaaatcacaggacgagcgattgaaagccctcgaggctttcaaaaaaggcgaagtt
gatttattggtctgtaccgatgtggctgcgcgtggtttggacatcaaagatgtgcccgct
gtgttcaactttgatgtgccgttcaatgcagaagattacgtccaccgcattggccgtacg
ggccgtgcaggtgcatccggtttggccgtcaccttggtgtcgccgtccgacatgcgtttg
gtggccgacatcgagaagctgatcaagaacaagttggaagttgaaacctaccccttggaa
aatgagggttctcgcaaccacttcggtgaaggccgccgtgatgagcgccgacccgaaggt
cgtggcgagcgccgagatgagcgccgagaagatcgccgcccagaacgcgggttcgagcgt
cgtcgtgaagaagagggcgatcgccgtagcagcttccgtcccgctcaggtttccagagac
ccgttctttgaaaagccctatgaggcgcaagagcctgctttggcgcaaagtggccctgcc
tcttgggaagccacacccaaatcagtggcagcacgccccggcttgtctgccaacatcaaa
cccaagcgcaaagttgctgctttgttcaagtctggcgagtaa
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