Limnohabitans sp. 103DPR2: L103DPR2_01183
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Entry
L103DPR2_01183 CDS
T04120
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim03420
Nucleotide excision repair
lim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L103DPR2_01183 (uvrD)
03430 Mismatch repair
L103DPR2_01183 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lim03400
]
L103DPR2_01183 (uvrD)
Enzymes [BR:
lim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L103DPR2_01183 (uvrD)
DNA repair and recombination proteins [BR:
lim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L103DPR2_01183 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
L103DPR2_01183 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_12
AAA_30
AAA_11
Sp-DndD
Motif
Other DBs
NCBI-ProteinID:
ALK91585
LinkDB
All DBs
Position
1191832..1194129
Genome browser
AA seq
765 aa
AA seq
DB search
MYDQTPLLNNLNPEQLRAVTLPSESALILAGAGSGKTRVLTTRIAWLLQTSQVGSGGILA
VTFTNKAAKEMMLRLQAMLPVNVRGMWIGTFHGLCNRFLRAHYKMANLPQTFQILDTQDQ
LSAIKRLCKQHGVDDERFPPKQLQWFIAGCKEDGLRPKDVDVRDDETRRKVEIYQLYEDQ
CQREGVVDFGELMLRSYELLRDNEAIRMHYRARFKHVLIDEFQDTNKLQYAWIKMIAGLP
AEHGSAVLAVGDDDQSIYAFRGARVGNMADFVREFGVQHQIKLEQNYRSYSNILDSANAL
IGNNKNRLGKNLRTDQGAGEPVRVYESTSDFAEAQWLVDEIRQLVKGDGFTRKEVAVLYR
SNAQSRVMETALFNAGVPYKVYGGLRFFERAEIKHALAYLRILENPNDDTSFLRIVNFPP
RGIGARSVEQLQDAAKGLGCSLHDAVSTTAGKAGAKLASFVAMIDVMREQTPGMTLREII
ELVLDKTGLIEHYKTEKEGADRVENLEELVNAAESFVTQEGFGRDAEATAQDMAPNAEDG
EVMSPLAAFLTHAALEAGDNQAQAGEDAIQLMTVHASKGLEFDAVFISGLEEGLFPHENS
MNDYDGLEEERRLMYVAITRARKRLYLSHSQTRMLHGQTRYNLKSRFLDELPEDCLKWIT
PKNPGFATGLGGGWASPAQAFQAKPAWGHSSLGSAETYKSPPVPVQKSEPSHGIKANMKV
FHTKFGEGKVLAVEGAGADARAQVNFPRHGVKWLALSVAKLTPVE
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaaacgcccctgttgaacaacctgaaccccgagcaattgcgggctgtcacc
ctgccttcggagtcggccctcattctggcgggggccggttcaggcaaaacccgggtattg
accactcgaatcgcttggttattgcagacctcgcaggtgggctcgggcggcattttggcc
gtgacctttaccaacaaggccgccaaagagatgatgctccgcttgcaagccatgctgccc
gtcaacgttcggggcatgtggattggcacattccacggcctgtgcaatcggtttttgcgg
gcccattacaaaatggccaacttgccgcaaaccttccaaattttggacacgcaagaccag
ttgtcggccatcaaacgtttgtgcaaacagcatggcgtcgacgatgaacgttttccgccc
aagcaattgcagtggttcattgcaggctgcaaagaggatggactgcgccccaaagatgtg
gatgtacgagacgatgaaacccgccgcaaagtcgagatctaccaactctacgaagaccag
tgccagcgagaaggcgtggtggattttggcgaattgatgctgcggtcgtacgagctcctg
cgcgacaacgaagctatacgcatgcattatcgtgcgcgcttcaaacacgtgttgattgat
gagtttcaagacactaacaagttgcaatacgcctggatcaaaatgattgcaggcttgccc
gcagagcatggcagcgcggtgctggcagtgggtgacgatgaccaaagcatttacgctttc
cgcggtgcgcgtgtgggcaacatggccgactttgtgcgtgaatttggtgtgcagcatcaa
atcaagctggaacaaaactatcgcagctacagcaatattttggattcagccaatgcgctc
attggcaacaacaaaaatcgcttgggcaaaaacttgcgcaccgatcaaggcgccggcgag
ccagtgcgggtgtacgagtccaccagcgactttgcagaagcgcagtggttggtcgatgag
atcagacaactggtcaaaggcgatggctttacgcgcaaagaagtggcggttttgtatcgc
agcaatgcccaaagccgcgtgatggaaacggccttgttcaatgcgggtgtgccctacaaa
gtttatggcggtctgcgcttctttgaacgtgccgaaatcaaacatgctttggcctacttg
cgcattttggagaaccccaacgacgacaccagtttcttgcgcatcgtgaattttccgccg
cgcggcattggcgcgcgcagtgtggagcaattgcaagatgcggccaaaggcttgggctgc
tccctgcacgacgcggtcagtaccactgcaggcaaagctggtgccaagttggccagtttt
gtggccatgatcgatgtgatgcgggagcaaacgcctggcatgacattgcgagagatcatt
gaattggtgttggacaaaacgggcttgattgagcattacaagacagaaaaagaaggtgcc
gaccgcgtagaaaacttggaagagttggtcaatgcggcagagagttttgtgacacaagaa
ggctttggccgcgatgccgaagccacggcccaagacatggcgcccaacgcggaagatggc
gaagtgatgtcacccttggcggccttcttaacgcatgcagccctggaagccggtgacaac
caagcgcaagcgggcgaagatgccatccaactcatgactgttcatgccagcaagggcctg
gaatttgatgcggtgttcatcagcggtttggaagagggcttgttccctcatgaaaattcg
atgaacgattacgacggtttggaggaagagcgaaggctgatgtacgtggccattacacgt
gcccgcaaacgcttgtacctcagccattcgcaaacgcgcatgctgcatggccaaacgcgt
tacaacctgaaaagccgctttttagacgaactgccagaagactgcttgaagtggatcacg
cccaagaatccaggctttgcaacgggtttgggagggggctgggcttcgcctgcccaggcc
ttccaggctaaacctgcttggggccacagcagtttgggctcggccgagacttacaaaagc
ccgcccgtgcctgtgcaaaaatcagagccttcgcatggcatcaaagcgaacatgaaagtg
tttcacaccaagtttggtgaaggcaaggtgttggccgtggagggcgctggcgctgatgcg
cgggcccaagtgaatttcccacgtcatggggtcaagtggttggccttgtcggtggccaag
ttgacgcccgttgaatga
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