Limnohabitans sp. 103DPR2: L103DPR2_01316
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Entry
L103DPR2_01316 CDS
T04120
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L103DPR2_01316 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lim03019
]
L103DPR2_01316 (rhlE_2)
Enzymes [BR:
lim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L103DPR2_01316 (rhlE_2)
Messenger RNA biogenesis [BR:
lim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L103DPR2_01316 (rhlE_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ALK91718
UniProt:
A0A0P0MF87
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All DBs
Position
complement(1330315..1332156)
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AA seq
613 aa
AA seq
DB search
MRRYKRSIMKFEELNLAPAILQAVQEQGYDTPTPIQAQAIPIVLAGHDLLAGAQTGTGKT
AAFMLPVLHKLSLTEAGRNKFGGKAIRALVLTPTRELAAQVEESVKDYGKYLSLQSTVVF
GGVGMKPQVDRVKRGVDVLVATPGRLLDLQGQGLLDLSSIEILVLDEADRMLDMGFIHDV
KKVLALVPKEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPSNTTVQRISQVIHPVGRG
KKKEVLVHIINQHNWSQVLVFTRTKFGANNVAEYLTKNGIKAMALHGNKSQTARTQALAG
FKSGDIRALVATDIAARGIDIEDLPHVVNYEIPNVSEDYVHRIGRTGRAGASGEAVSLVC
LDEEGFMMEIERFTKQEIPVQLLEGFGPEPGEKAEPIAMGRQTLWGGAGRPPSRDVMQAA
AKAARSDMMQRIRESKGAAGEGGGGGRGGRSGGQGGGGGQPRPEGAAGRSRNGPPPSRRG
GSSQGPRGDRQDRPERSFDGAPSDRFNDRNDRHNDRRNDRGPRGDELPRHIDPLMTNQFA
RQGAPRRNSGGGGGQPDPTRTSIDSLAGGGRGGPRRHGGGGGGGFGGGGGRGGRSGGGGG
YGGGNGGGRSFGR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgctataagcgctccatcatgaaatttgaagaattgaatttggctccggccatt
ctgcaagccgtgcaagagcaaggctacgacacacccacgcccattcaggcccaagcgatt
cctatcgtcttggcagggcacgacctgttggccggtgcccaaacaggaaccggcaaaact
gctgcattcatgctgcctgtgctgcacaagctcagcctgaccgaggccggtcgcaacaaa
tttggcggcaaagccatccgcgctttggtgctcacccccacccgcgaattggcggcccaa
gttgaagagtctgtcaaagactacggcaagtacctcagcctccaatccaccgtggtgttt
ggcggcgtgggcatgaaaccccaagttgaccgtgtcaagcgcggcgtcgacgtgttggtt
gccacaccgggtcgcctgctcgacctgcaaggccaaggcctgctcgacttgtcgagcatt
gaaattttggttttggacgaagcggaccgaatgctcgacatgggatttatccatgacgtg
aagaaagtcttggccctggtgcccaaagaaaagcaaagtctgctgttctctgccacgttc
agcgatgaaattcgcgacttggccgccacgctgttgaagaacccacaaagcattcaagtc
acgcccagcaacacgaccgtgcagcgcatttctcaagtgatccatcctgtgggtcgcggc
aagaaaaaagaagtgctggtgcacatcatcaaccaacacaattggagccaagtgctggtg
ttcactcgcaccaagtttggcgccaacaatgtggccgagtatttgaccaagaatggcatc
aaagccatggcgctgcacggcaacaaaagtcagacggcacgcacacaagctttggcaggt
ttcaagagcggcgatattcgcgccttggtggccaccgacattgcagcccgcggcatcgac
attgaagatttgccacacgtggtgaattacgaaatccccaacgtctctgaagactatgtg
caccgcattggccgtacgggtcgtgctggcgccagcggcgaagcggtgagtttggtgtgc
ttggacgaagaaggtttcatgatggaaatcgaacgcttcaccaagcaagaaattccagtt
caattgctcgaaggttttggccccgagccaggcgagaaagcggaacccattgccatgggt
cgccagactttgtggggcggcgcgggtcgcccacccagccgtgatgtgatgcaagctgca
gccaaagctgcgcgctccgacatgatgcagcgcattcgcgaatccaaaggcgctgccggc
gaaggtggcggtggcggtcgtggcggtcgctccggtggccaaggcggtggcggtggccag
cctcgccccgagggtgcagcaggacgctcacgcaacggccctcccccatcacgtcgcggc
ggttcttcacaaggcccacgcggggatcgtcaagatcgtcccgaaagaagttttgatggc
gcgccctccgatcgtttcaacgatcgcaatgaccgccacaacgaccgacgcaatgaccgt
ggcccccgtggcgacgaattgccacgtcacattgatccgctcatgaccaaccaatttgca
cgtcaaggtgcacctcgtcgcaacagcggtggcggcggaggtcaacccgatccaacacgc
accagcatcgacagcttggcgggcggtggccgtggtggtcctcgccgtcatggcggcggc
ggtggcggcggatttggtggcggtggcggccgtggtggtcgctctggcggcggtggcggc
tatggtggtggcaacggcggcggccgttcgttcggccgttga
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