Limnohabitans sp. 103DPR2: L103DPR2_01361
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Entry
L103DPR2_01361 CDS
T04120
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L103DPR2_01361 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lim03019
]
L103DPR2_01361 (pnp)
03016 Transfer RNA biogenesis [BR:
lim03016
]
L103DPR2_01361 (pnp)
Enzymes [BR:
lim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
L103DPR2_01361 (pnp)
Messenger RNA biogenesis [BR:
lim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
L103DPR2_01361 (pnp)
Transfer RNA biogenesis [BR:
lim03016
]
Prokaryotic type
tRNA degradation factors
L103DPR2_01361 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
DNA_pol3_a_NI
KH_KhpA-B
DUF5813
aRib
Motif
Other DBs
NCBI-ProteinID:
ALK91763
UniProt:
A0A0P0MFF8
LinkDB
All DBs
Position
1384797..1386914
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AA seq
705 aa
AA seq
DB search
MSIFNKVTKTFQWGQHKVIMETGEIARQASGAVLVNIEDTVVLATVVASKNSKAGQDFFP
LTVDYIEKAYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVVHTV
SLNPEVDADIAALIAVSAALSISGVPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLV
VAGTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNIAINAIHELVRDAGKPAWDWTAPAK
DEGLIAKVKAHAEEKLRAAYQIRNKQSRTQACRETYAATMEGLKAEGVEFDSVKVEGMLF
DIEANIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSTLFTRGETQALVIATLGT
ERDAQRIDALAGEYEDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAAVLPTK
EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDANRFAVL
TDILGDEDHLGDMDFKVAGTTNGVTALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMSEAKTEVSNFAPKLFTMKINPEKIRDVIGKGGATIRALTEETGTQININEDGTITIA
AADGAKADEAKRRIEQITAEVEIGKVYEGPVTKLLDFGALINLLPGKDGLLHISQIAHER
VEKVSDYLQEGQIVKVKVLETDEKGRVKLSMKALIDRPAAPAQSE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtccatttttaacaaagtgacaaaaaccttccaatggggccaacacaaggtcatcatg
gaaaccggcgaaattgctcgccaagcttccggcgctgtgctggtcaacattgaagacacc
gtggttttggccacagtggtggcttccaaaaattccaaagccggtcaagacttttttccc
ttgacagtggactatattgagaaagcctacgcagctggcaagattcctggcagcttcttc
aagcgtgaagccaagcccagcgagttggagaccctcaccagccgcctgatcgaccgtcct
attcgccctctgtttccagaaggtttctacaacgacgtgcacgttgtggtgcacaccgtt
tctttgaaccctgaagtcgatgccgacattgcagctttgatcgctgtgagcgccgcattg
tctatttctggcgtacctttcaatggccctattggcgctgcgcgcgtgggttacatcaac
ggcgaatacgtgttgaaccccggtcaaacacaacgcaaagacagccagatggatttggtc
gttgccggtactgaagctgccgtgttgatggtggaatctgaggcgcaacagttgtctgaa
gagatcatgttgggtgctgtggtgtttggccacgagcaaggcaacattgccatcaatgcc
attcacgaattggtgcgcgatgctggtaaacccgcttgggattggactgcgcccgccaag
gacgaaggcctcattgccaaggtgaaagcacacgccgaagaaaaactgcgcgctgcttac
caaattcgcaacaaacaaagccgcacacaagcttgccgcgaaacctacgccgccaccatg
gaaggcctcaaggctgaaggcgttgagttcgacagcgtcaaagttgaaggcatgttgttt
gacatcgaagccaacatcgttcgcagccaaatcttggcaggcgagccccgcatcgacggc
cgcgacacacgcaccgttcgtcctatcgaaattcgcaactccgtgttgccacgcacacac
ggctctacacttttcacacgtggcgaaacacaagcattggtgatcgccactttgggcaca
gagcgcgatgcacaacgcattgacgcattggccggtgagtacgaagaccgcttcatgttg
cactacaacatgcctccctttgccaccggcgaagtgggccgcatgggttctacaaagcgt
cgtgaaattggtcacggccgtttggccaagcgtgccttggctgctgttttgcctaccaaa
gaagagttcccctacaccatgcgtgtggtctctgaaattacagagtccaatggttcttct
tccatggcttctgtgtgcggcggctgcttgtccttgatggacgctggcgtgcccatgaaa
gcgcacgtggccggtattgccatgggcctgatcaaagacgccaaccgctttgctgtgttg
accgacatcttgggcgacgaagatcatttgggtgacatggactttaaagtggccggtacc
accaacggcgtgacggctttgcagatggacatcaaaatccaaggcattaccaaagagatc
atgcaagtggccttggcacaagccaaagaagcgcgcatgcacatcttgggcaagatgcaa
gaagccatgagcgaagccaaaaccgaagtgtccaacttcgcacccaagctcttcaccatg
aagatcaatcccgagaaaattcgcgatgtgatcggcaagggcggcgccaccattcgtgcg
ctgactgaagaaactggcacacagatcaacatcaatgaagacggcacgatcaccatcgct
gctgccgatggtgccaaggctgatgaagccaaacgccgcattgagcagatcactgctgaa
gttgaaatcggcaaagtctacgaaggccccgtcactaagttgttggacttcggtgcgttg
atcaatttgttgcctggcaaagatggcttgttgcacatcagccaaatcgcccatgagcgc
gttgaaaaagtgtctgactatttgcaagaaggtcagatcgtcaaagtcaaagtgctcgag
accgacgaaaaaggccgcgtgaaattgtccatgaaagccttgatcgatcgtcctgctgcg
cccgcgcaatcagagtga
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