Limnohabitans sp. 103DPR2: L103DPR2_01782
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Entry
L103DPR2_01782 CDS
T04120
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim03030
DNA replication
lim03430
Mismatch repair
lim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L103DPR2_01782 (holB)
03430 Mismatch repair
L103DPR2_01782 (holB)
03440 Homologous recombination
L103DPR2_01782 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lim03032
]
L103DPR2_01782 (holB)
03400 DNA repair and recombination proteins [BR:
lim03400
]
L103DPR2_01782 (holB)
Enzymes [BR:
lim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L103DPR2_01782 (holB)
DNA replication proteins [BR:
lim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
L103DPR2_01782 (holB)
DNA repair and recombination proteins [BR:
lim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
L103DPR2_01782 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DrmE_N
Motif
Other DBs
NCBI-ProteinID:
ALK92180
UniProt:
A0A0P0MH60
LinkDB
All DBs
Position
complement(1830945..1831949)
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AA seq
334 aa
AA seq
DB search
MTATAPWIERQSLALLSQQGHAWLLQGPSGLGQYELATSMVSAWLCESATALSDGACGHC
GSCHALSVHTHADLMVLMPETILLELGWPLSEKAQSEIDNKTRKPSKEIRIEAMRDAIEF
SQRTNARGKGKAVLVYPAERMNHVTANALLKTLEEPPGDVKFVLATEAAHQLLPTIRSRC
LIHTMAWPSETEAVQWLETQSLSKDDAIALLKAAGGRPDEVLKQRNLGQSMQWWSKFPKA
MLAGDASYCSDLPASEVIDALQKLCHDLLMLQTHATLRYFNEVDLPKLKVSSAQLTAWFK
RLSQAAKTSEHPFNAGLMLEALCTEAREVLNSSS
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaactgcaccctggattgaaaggcaaagcttggccttgctgtcgcagcaaggt
catgcttggctgttgcaaggcccgtctggattgggtcaatacgagctggccacgtcgatg
gtcagcgcatggttgtgtgagtcagcgacggcactgtctgatggcgcttgtgggcattgc
ggcagttgtcatgctttgagtgtgcacacccatgctgacttgatggtgctgatgccagaa
accattttgctagaactgggctggcccttgagcgaaaaagcccaatctgaaatcgacaac
aaaactcgaaaacccagcaaagaaattcgcattgaagccatgcgcgatgccattgagttt
tcacagcgtaccaatgcaagaggtaaaggcaaggccgttttggtttatccggcagagcgc
atgaaccatgttacggccaatgcactgcttaaaaccttggaagagccaccaggcgatgtg
aaatttgtcttggccactgaagctgcacatcagttgcttcctaccattcgcagccggtgc
ttgatacatacaatggcatggccttcggaaacagaagcagttcaatggttagaaacgcaa
tcactctccaaggatgacgctatcgctttgctcaaagcggcaggaggtcgacctgacgaa
gttctgaagcaacgcaatttggggcagtcaatgcaatggtggtcaaaattccccaaggcc
atgttggcgggagatgccagctattgctcggacttaccagcctctgaagtcattgatgcg
cttcaaaaactgtgtcacgatttattgatgcttcaaacacacgcgacattacggtatttc
aatgaagtggatcttcccaagctcaaagtttcatcagcgcaactcactgcttggtttaaa
cggttgtcgcaggctgccaaaacgtctgaacatcctttcaacgcgggcctgatgctagaa
gccctttgtactgaagcacgtgaagtgctgaacagctcctcctag
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