Limnohabitans sp. 103DPR2: L103DPR2_01887
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Entry
L103DPR2_01887 CDS
T04120
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lim
Limnohabitans sp. 103DPR2
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lim03019
]
L103DPR2_01887 (hrpB)
Enzymes [BR:
lim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
L103DPR2_01887 (hrpB)
Messenger RNA biogenesis [BR:
lim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L103DPR2_01887 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
NACHT
AAA_19
T2SSE
nSTAND3
AAA_23
HA2_N
SRP54
AAA_30
AAA_25
ResIII
CdvA
TsaE
Motif
Other DBs
NCBI-ProteinID:
ALK92283
UniProt:
A0A0P0MGR1
LinkDB
All DBs
Position
complement(1947805..1951710)
Genome browser
AA seq
1301 aa
AA seq
DB search
MSATPLKIEFPESLPVSAKRDEIAQAMADHQVIIVCGETGSGKTTQLPKIALALGRGKLN
AAPGQRAKWIGHTQPRRIAASSVAKRIAEELKTPLGDVVGYKVRFQDRLSKDASVKLMTD
GILLAETQNDPLLEAYDTIIIDEAHERSLNIDFLLGYLRQILPRRPDLKVVVTSATIDAD
RFAQHFASSKGPAPVIMVSGRTFPVEMRWRPFEESRDRDLNDAIAEAVDELWTGHAAGDI
LVFLPGEREIREANDHLRKHLSHSAVTRGAEVLPLFARLSQSDQERVFESHNGRRIVLAT
NVAETSLTVPGIRYVIDVGTARVKRYSLRSKVEQLLVEPISQAAANQRAGRCGRVANGIC
IRLYDEKDFNSRPRFTDPEILRSSLAGVILRMKSLHLGVVDDFPFIEAPSKRAITDGYQL
LAELGAVNDANELTRTGVELAKLPLDPRVGRMILEARDRQALDEVLIIASALSVQDVRDR
PLDAQAQADQAHVKFDDEKSEFTGYLKLWKWLSEARGGKSAAGSEHKLSNRQYEQLLRQN
FVNVRRVREWRDTHTQLHTTVAEHRWVLNAKPASYEQIHLSMLAGLLGNVGCKLDDEDVY
LGARGIKFYRHPGAHLSKKPGRWTVVSELVETTRLFGRGIANIEPTWLEQVGGHLLRKQL
LDPHWEKKSGEVIALERATLYGLVVYSGRRVPFGKVDPQTAREIFIREALVQGQWETQLP
FLAANHKMIAKVEELEHKSRRQDVLVDDELIYAFYDQQIPADVCSGRLLEAWYRNEVMRQ
PKLLVLSREELMRHEAAGITTQAFPKTIRLGGTDCNATYLHEPGDARDGVTVTVPLFVLN
QVSEERCEWLVPGLLKDKIHALLKSLPQKPRSRFVPLPESASKLAEVLGAPDVFGAGSLT
DALLKKVRDITSLDVKRADFKLDMLSPHLFMNLRVVDEHGRQLGMGRNLGALKADWGSQA
RGAFQALAQLKVQPSAGPVAVSQSGSVNAQQRASGTAGAATKAASASSANPSQKTPAVSQ
QRYTAWTFGDLPELMEINKGGQSLIGFPALVDLNDAVQIEVFDEPEVAAQKHREGLRRLF
ALQIKDALKYLEKNIPDLQKMAVAYMPLGTADELRQQIIEVALDRAFLMDPLPADEFSFK
KRIDEGRGRLTLIANEVARLTGIILLEFAAATRKIKDTKNAPDATADCSQQLQRLMPKRF
MAFTPWTQLQHYARYLKAIVLRLDKYRADPARDAAKLLELKPQEQRYWRLVAERKGAVDD
RMLEFRWLLEELRVSFFAQELRTPQPVSVKRLDKAWAQLNH
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgccacccccttgaaaatcgagtttcctgaatctttgccagtgtcggcaaagcgc
gacgaaattgcgcaggccatggcggatcaccaggtcatcatcgtctgtggcgagaccgga
tcaggcaaaaccacccaactccccaagattgccctggctctgggccgcggcaagctcaat
gctgcccccggccaacgtgcaaagtggattggccatacccaacccaggcgaattgccgcc
agcagtgtggccaagcgcattgcagaggagttgaaaacgcccttgggcgatgtggtgggt
tacaaggtgcggtttcaagaccgcttgtccaaggatgcttcagtcaaattgatgactgac
ggcattttgttggccgagacgcaaaacgacccgttgctcgaagcctacgacacaatcatc
atcgatgaagcgcacgaacgcagcctgaacattgatttcttgttgggctacttgcgccag
atcttgccccgtcgtcccgacttgaaagtggtcgtgacgtcggccaccatcgacgcagat
cgttttgcgcagcactttgcttccagcaaaggtcctgccccggtcatcatggtgtcggga
cgcactttcccggttgaaatgcggtggcgtccctttgaggaatcgcgtgaccgcgatttg
aacgatgccattgccgaggcggtggatgaactttggaccggccatgctgctggcgacatc
ttggtatttttgccaggcgagcgtgagattcgcgaggccaatgaccatcttcgaaagcat
ttgtcgcacagcgctgtgacgcgtggggcagaagtcttgcctttgtttgcgcgtttgtct
caatctgaccaagagcgcgtgtttgaaagtcacaacgggcgccgtatcgtattggccacc
aacgtggccgaaacatctttgacggtgcctggcattcgttatgtgatcgatgtcggcact
gcacgtgtgaagcggtacagcctgcgcagcaaggtggagcaattgctggtggagcccatc
agccaagcggcggccaatcagcgcgctggccgttgcggccgtgtggccaatggcatttgc
atccgtttgtacgacgagaaagatttcaacagtaggccacgttttaccgatccggaaatt
ttgcgctcctcgttggcaggcgttattttgcgcatgaagtctttgcacttgggtgtcgtg
gacgatttccctttcattgaagcgccgtccaagcgcgccattaccgatgggtatcagttg
ctggccgagcttggcgccgtgaacgatgccaatgagttaacccgcacaggcgtagagttg
gcgaagctgccactagacccacgcgttggccgcatgatcttggaagcgcgtgaccgacag
gctttggacgaagtgttgatcattgccagtgccttgtcggtgcaagatgtgcgcgacaga
cccttggatgcgcaagcacaggccgatcaggcgcatgtgaagtttgacgacgaaaagagt
gaattcacaggctatttgaaattatggaagtggttatccgaggcgcgtggcggcaagtcc
gctgcaggctctgagcacaagctgagcaatcgtcaatatgaacaactcttgcgtcaaaac
tttgtgaacgttcgcagagttcgtgaatggcgcgatacgcatacgcaattgcacacgacg
gttgctgagcatcgatgggtcctgaatgccaaacctgcgagctatgaacaaatccacttg
tcgatgttggcgggtttgcttggcaatgtgggctgcaagctggacgatgaagacgtttac
ttgggcgcacgtggcatcaagttttatcgtcacccaggtgcgcacttgtctaaaaagcct
ggccgctggacggtggtctctgaattggtggagaccacacgcttgtttggtcgtggcatt
gccaacattgaacctacttggcttgagcaagtgggaggtcatttgctgcgcaagcaactc
ttagatccgcactgggaaaagaagtctggcgaggtcattgcactagagcgggccacgctt
tatggcctggtggtgtacagcggtcgacgcgtgccctttggcaaagtggaccctcaaact
gcacgtgaaattttcattcgcgaggccttggtgcaagggcagtgggaaacacaactgccg
ttcttggcggccaatcacaagatgattgccaaggtcgaagagttagagcacaagtcgaga
cgccaagacgttttggtggacgatgagctgatttatgctttttacgatcagcaaattcca
gccgatgtgtgttcggggcgtttgcttgaagcttggtatcgcaacgaagtgatgcgccaa
cctaagttgttggtgcttagccgtgaagagttgatgcgtcatgaggctgcaggcattacc
acgcaggcttttcccaaaacgattcgcctcggtggcacggactgcaatgccacctatctg
cacgaaccgggtgatgcgcgcgatggcgtgacggtgaccgtgcctttgtttgtgctgaac
caagtgagcgaagagcgttgcgaatggctggtgcccggtttgctcaaagacaaaattcat
gcattgctgaaaagcttgcctcaaaaaccacgctctaggtttgtacctttgcccgagtcg
gcttcgaagttggctgaggtattgggagcccccgatgtttttggcgcaggctctttaacc
gacgccttattgaagaaggtacgtgacatcaccagtttggatgtgaagcgcgctgacttc
aagctggacatgctcagcccgcacttgttcatgaacttgcgtgtggtcgatgagcatggc
cgccaattgggcatggggcgcaacttgggagcgcttaaggccgattggggatcgcaagcg
cgaggcgcatttcaggcattggcgcagctcaaggtgcaacctagtgcgggtccagtggcg
gtttcccagtcgggatctgtcaatgcgcaacaacgtgcatcaggtacggccggtgctgct
acaaaggccgcatcagcttcatcagcgaatccatcccaaaagacacctgctgtctcgcag
caacgctacaccgcttggacttttggtgatttgcctgaactcatggagatcaacaaaggc
ggtcaaagtctgattggctttcctgcattggtggacttgaacgatgcggtgcaaattgag
gtctttgacgaacccgaggtggcagcgcaaaaacaccgagaaggcttgcgtcgtttattc
gcattgcaaattaaagatgctttgaagtatttggaaaaaaacattcccgatttgcaaaag
atggccgtggcctacatgcctttgggcacggccgatgaattgcgtcagcaaatcattgaa
gttgctttggaccgtgcatttctcatggaccctttgccggcagatgagttcagcttcaag
aaacgcattgatgaaggaagagggcgcctgaccctgattgcgaatgaagtggcgcgcttg
accggcatcatcttgcttgaatttgcggctgccactcgcaaaatcaaagataccaagaat
gcacccgacgccacagccgattgttcgcagcaattgcaacgcctgatgcccaaacgtttc
atggcgttcacaccttggacgcaactgcagcactatgcccgttatctaaaagccatcgtg
ttgcgcttagacaaataccgcgctgatcctgcgcgtgatgctgcgaagttgttggaactc
aagccacaagaacaacgctattggcgcttggtcgccgagcgcaaaggtgctgtcgatgac
cgaatgctggaatttcggtggttattggaagagctgcgggtgagtttctttgcgcaagag
cttcgcacacctcaaccggtcagtgtgaagcgccttgacaaagcttgggcacagttgaac
cactga
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