Limnohabitans sp. 103DPR2: L103DPR2_02080
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Entry
L103DPR2_02080 CDS
T04120
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L103DPR2_02080 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lim03400
]
L103DPR2_02080 (mfd)
Enzymes [BR:
lim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L103DPR2_02080 (mfd)
DNA repair and recombination proteins [BR:
lim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L103DPR2_02080 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
AAA_25
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALK92472
UniProt:
A0A0N7JA08
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All DBs
Position
2155417..2158911
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AA seq
1164 aa
AA seq
DB search
MQLPALSLGKRFTLPRPIGSADAVLLAQLAEREKAQGRLTAVVTSDAADTQRLMDEVAFF
APGLRIAIFPDWETLPYDTFSPHQDLISERLATLWRISQRDKAEGADLVFIPATTALYRL
APPSFLAGYTFQFKTKQKLDEAKLKSQLTLAGYSHVSQVVSPGEYAVRGGLIDLFPMGSQ
VPYRVDLFDNEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEAARAKFRSRWRELLEG
DPTKSRIYKDMGNGVATAGIEYYLPLFFEETATVFDYLGAGTDMPATLVLLGDLEPAFQR
FWQDTKDRYRLVQGDPERPALPPEALFLSAEQFYTGTHQHAQLALRQGADAGADNTLAQA
LPDLTVVRGAEEPLAKLQAHIRSTPHRVLILAESAGRRESLLDFLRTGGVSPPAFDDLQE
FQASDEKIGIATAALNAGFHWFEAGIDLVTETELFAAGVTTRRRKKQEQVSDVEALIKDL
SELNVGDPVVHNAHGIGRYRGLVNMDLGEKNPDGTPALQEFLHLEYADKATLYVPVSQLQ
LIGRYTGVSADEAPLHRLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREGHPFRYSP
QDYEVFANDFGFSETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVT
GGKQVAILAPTTLLAEQHFQTLKDRFSKWPVKVAEVSRFRSTKEVNEALKGLADGTVDIV
VGTHKLLSESTKFKNLGLLVIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMAL
EGIRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQ
KLEEILPEARIAVAHGQMPERDLEKVMRDFVAQRYNILLCSTIIETGIDVPTANTIVISR
ADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDMDGLTKQASQRLDAIQQMEELGSGFYLAM
HDLEIRGAGEVLGENQSGNMMEIGFQLYNEMLNEAVRCLKAGKEPDLLSPLSAATDINLH
APALLPNDYCGDVHLRLSFYKKLATAKTTDQIDGLLEEIVDRFGKLPPQAQTLMDVHRLR
VMSVPYGVVKVDATPNVIVISFKPNPPIEPMRIIELIQKNKHIQLAGNDKLRIERELPDP
KARAQMVRDILRSLGQPKIETVEG
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcaattacccgcgctgagcttaggaaaacgctttaccctgccccgccccatcggctcg
gcagatgctgtgctgttggcccaactggccgaacgagagaaagcacaaggccgcctgacg
gccgtggtgacatcggatgcggccgacacacaaaggctgatggacgaggtggccttcttt
gcaccgggccttcgcattgccatttttcccgactgggaaacattgccctacgacaccttc
tcgccccaccaagatctgatcagcgaacgtttggccaccttgtggcgcatcagtcagcgc
gacaaagccgaaggggccgacttggtgttcatcccggccaccacagccttgtaccgcttg
gcaccaccttcgtttttggcgggctacacctttcaattcaaaaccaaacaaaagctggac
gaagccaagctcaagtcgcagctcactttggccggttacagccacgttagccaagtggtg
agcccgggcgaatatgccgtgcgcggtggcctgattgatttgttccccatgggctctcag
gtgccctaccgtgtcgatttgtttgacaacgaaattgactccattcgcaccttcgacccc
gacacacagcgcagcttgtaccccgtacccgaagtgcgtttgctgccgggtcgagagttc
cccatggacgaagccgcgcgcgccaagtttcgcagccgatggcgcgaattgctagaaggc
gaccccaccaaaagccgcatctacaaagacatgggcaatggcgtcgccacggccggcatt
gaatattatttgccgctgttctttgaagaaaccgccacggtatttgactatctgggtgca
ggcacggacatgccggccaccttggtcttgctcggcgatttagagcctgcctttcaacgt
ttttggcaagacaccaaagaccgctatcgattggtgcaaggcgacccagaacggccagcc
ttaccacccgaagcattgttcttatcggctgagcagttctacacaggcactcaccagcat
gcgcaattggcgctcaggcaaggtgcagatgccggcgcagacaacacactggcgcaagcc
ctgcccgacctcacggtggtacgcggtgcggaagaacctttggccaaacttcaagcgcac
attcgaagcacaccccatcgcgtcttgattctggccgagagcgctggcagacgagaaagt
ttgctcgactttttgcgaactggcggcgtcagccctccggcctttgatgatctgcaagaa
tttcaagccagtgacgaaaaaataggcattgccacggccgccttgaatgctggtttccac
tggtttgaagcaggcattgatttggtcacagagaccgaattgtttgcagcaggtgtcacc
acgcgtcgccgtaaaaaacaagaacaagtcagcgatgttgaagcgctgatcaaagatttg
tccgagctcaacgtgggcgaccctgtggtgcacaacgcccacggcattggccgctaccgc
ggtttggtgaacatggacttgggtgagaagaacccagacggcacgcccgccttgcaagag
tttttgcatttggaatacgccgacaaagccacgctgtatgtgcccgtcagccaattgcaa
ttgattggccgttacaccggtgtgagtgccgatgaagcgccgctgcaccgtttgggcagt
ggtcagtgggaaaaggccaaacgaaaagcggccgagcaagtgcgagactccgccgcagaa
ctgctcaacatctacgcgcgccgcgcagcgcgcgaaggccatcccttcagatacagccca
caagactacgaagtctttgccaatgactttggtttcagcgaaacagccgaccaaaacgcc
gcaattcatgccgtgattcaagacatgatcagcccccgccccatggaccgtttggtttgt
ggcgatgtgggctttggcaaaaccgaggtggccttgcgcgcagcctttgtggccgtgacg
ggtggcaagcaagtggcaattctggcgcccaccaccttgctggccgagcaacatttccag
acactgaaagatcgcttttcaaaatggcccgtgaaggtggccgaggtgtcgcgctttcgc
tcgaccaaagaggtgaatgaggcgctcaaaggtttggccgatggcaccgtggacattgtg
gtgggcacacacaaactgctgagtgaatcgaccaagttcaagaacttggggctgctggtg
attgacgaagaacaccgctttggtgtgcgtcacaaagaggccatgaaggccatgcgcgct
gaagtggatgtgctgaccctgacggctacgcccattccgcgcaccttgggcatggcacta
gaaggcattcgtgatttgagcgtgattgccacggcgccgcaacgccgcttggccatcaaa
acctttgtgcgcaatgaaggcaccggggtgatccgcgaggccgttttgcgcgaattgaaa
cgcggtggtcaggtttacttcttgcacaacgaagttgagacgatcgagaaccgccgtcaa
aagctggaagagatattgccggaagcacgcattgcagtggcccacggccaaatgcccgag
cgcgacttggaaaaagtcatgcgcgactttgtggcgcagcgctacaacatcttgctctgc
tccaccatcattgaaaccggcattgatgtgcccaccgccaacaccattgtgatttcgcgc
gccgacaaatttggcctggcgcagttgcaccaattgcgcggccgtgtgggacgcagtcac
caccaggcctatgcttatttgatggtgcctgacatggatggcctcaccaaacaggcgtcg
cagcgcttagacgccatccaacaaatggaagagctgggcagcggtttttacttggccatg
cacgatttggaaattcgcggtgccggtgaagtgttgggtgaaaaccaaagcggcaacatg
atggagattggctttcagctttacaacgaaatgttgaacgaagcggttcgttgcttgaag
gctggcaaggaacccgatttgctcagccccttgtctgccgccaccgacatcaatttgcac
gcccctgccctgctacccaatgactactgcggcgatgtgcatttgcgtttgtcgttctac
aagaaattggccacagccaaaacgaccgaccaaatcgatggcctgttggaagaaattgtc
gatcgctttggcaagctgccaccgcaagctcaaaccctgatggatgtgcatcgtttgcgc
gtcatgagcgtgccttatggcgtggtcaaggtagacgccacacccaacgtgattgtgatc
agcttcaaacccaatccacccattgagccgatgcgcatcattgagttgattcaaaagaac
aagcacattcaattggccggcaacgacaagttgcgaattgaacgtgagctgcccgatcca
aaagcacgagcccagatggtgcgagacattttgaggtcattgggacaacctaaaattgag
acagtggaaggataa
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