Limnohabitans sp. 103DPR2: L103DPR2_02115
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Entry
L103DPR2_02115 CDS
T04120
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lim
Limnohabitans sp. 103DPR2
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lim03009
]
L103DPR2_02115 (rlmD)
Enzymes [BR:
lim01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
L103DPR2_02115 (rlmD)
Ribosome biogenesis [BR:
lim03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
L103DPR2_02115 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
RrnaAD
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_23
Methyltransf_11
MTS
Motif
Other DBs
NCBI-ProteinID:
ALK92507
UniProt:
A0A0P0MH08
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All DBs
Position
complement(2191225..2192664)
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AA seq
479 aa
AA seq
DB search
MSKQSDSSREEQTQEIVFGRTDLPEGWLHIDALDMEAQGIARRPDGKVVFVEGALPFEQV
SVNVHRKKNNWEAGVVTAVHHESSQRVKPGCPHFGLHAGACGGCKMQHLEASAQVAVKQR
VLEDNLWHLGKVKPENLLRPMEGPSWGYRYRARMSVRYVHKKGEVLIGFHERKSRYVADI
KTCRVLPPNISAMLMALRELIFGMDARETVPQIELAQGDTVTALVLRHLEPLTQADQERL
RAFAKQHDVQWWLQIKGPDTVKLMDEGGPELSYDLPDFGVHMPFKPTDFTQVNPHINRVL
VTRALRLLKPEAQERVIDWFCGLGNFTLPIATTAKEVVGIEGSETLVARSRDNFARNQGM
RGAGKPLAPTQFIARNLFEMTPEMLMADGIADKWLIDPPREGAFALAKSLAELHENTELR
GQWQFPKRIVYVSCNPATLARDAGLLVHRAGYRCLSAGVINMFAHTAHVESMAVFERID
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaacaaagcgattcttcgagagaagaacaaacacaagagatcgtctttggccgc
actgatttgcctgaaggttggttgcacattgatgcgctcgacatggaggcccaaggcatt
gccaggcgccctgatggtaaagttgtttttgtagaaggcgcactgccgtttgagcaagtg
tctgtcaatgttcatcgcaagaaaaacaattgggaggcgggtgttgtcactgccgttcat
catgaatcttcacaacgtgtgaagcctggctgtccgcattttggattgcatgcgggtgca
tgcggtggttgcaaaatgcagcacctggaagccagtgcgcaagtggcggtcaagcaacgt
gtcctcgaagacaacttgtggcacttgggcaaagtcaaacctgaaaatttgctgcgtcct
atggaagggcccagctggggttaccgataccgtgcccgcatgtcggtccgatacgttcac
aaaaaaggcgaagttttgatcggctttcacgagcgcaagagtcgctatgtggccgatatc
aaaacctgccgcgttttaccgcccaacatcagcgccatgctgatggctttgcgagaactt
atttttggcatggatgcgcgtgaaactgtgccccaaattgaattggcccaaggcgacacg
gtcactgccttggtgctgcgacatctcgagccactcacacaggccgatcaagaacgcttg
cgtgcgttcgcaaaacaacatgacgttcaatggtggttgcaaatcaaaggcccggacacc
gtgaagttgatggacgagggtggtcctgaattgtcatacgacctgcccgattttggcgtt
cacatgcctttcaagcccaccgatttcacgcaggtcaatcctcacatcaaccgagtcttg
gtgacacgcgctttgcgtttactcaagcctgaagctcaggaacgcgtgatcgattggttt
tgtggcttgggtaatttcacattgccgattgccaccacggccaaagaagtggtgggcatc
gaaggatcagaaaccttggtggcgcgctcacgcgacaattttgcgcgcaatcaaggcatg
cgaggtgcgggcaagccgttggcaccaacccaattcattgcgcgcaatttgtttgaaatg
acgcccgagatgctgatggccgatggcattgctgacaagtggctgatcgatccgccccga
gagggtgcttttgctttggccaagtctttggctgagttgcacgaaaacaccgaattgcgc
ggtcaatggcaatttccaaaacgcattgtgtatgtcagctgcaaccccgccaccttggcc
cgtgatgcgggcctgttggtccacagagctggctaccgttgcctcagtgccggcgtgatc
aacatgtttgcacacaccgcccacgtggaaagcatggcggtatttgagcgaattgattga
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