Limnohabitans sp. 103DPR2: L103DPR2_02511
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Entry
L103DPR2_02511 CDS
T04120
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim03410
Base excision repair
lim03430
Mismatch repair
lim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
L103DPR2_02511 (recJ)
03430 Mismatch repair
L103DPR2_02511 (recJ)
03440 Homologous recombination
L103DPR2_02511 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lim03400
]
L103DPR2_02511 (recJ)
DNA repair and recombination proteins [BR:
lim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
L103DPR2_02511 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
L103DPR2_02511 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L103DPR2_02511 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
ALK92892
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Position
2593392..2595107
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AA seq
571 aa
AA seq
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MSLQILTRDVPPRTAWTLEQAGVHPLLSRLFAARGIQSPDELDDGLAKLLPPQTLKGTEA
AANLLADAIAAQKRLCIVADYDCDGATACAVGLRGLRMLGAQHVSYIVPDRVVDGYGLTA
PIAQRVQQAGADVLITVDNGIASMEGVAQAQALGLQVLVTDHHLPAATLPSADVIVNPNQ
PGCSFESKALAGVGVMFYVLLALRAELRKRGLFTAETQPKLDALLPLVALGTVADVVKLD
NNNRRLVAQGLKRIRAGAMPTGMLALFKAAGRDARVATTFDFGFALGPRINAAGRLSDMT
LGIECLSTDDAARADELARQLDSINRERRDIEGDMRQQAMEIAESLMDDSEEPPPAICVF
DPDFHEGVVGIVASRIKDKFHRPCFVFAASNAPGKEHELKGSGRSIPGFHLRDALDLMVK
KHPHLLLRFGGHAMAAGCTIEEEHLELFEACFMEVAAQLLSPATLQRKLETDGPLDAQYR
RAEFVDVMHKEVWGQGFAPPVFSDEVEVVSQRLVGEKHLALKLKHQGQPVDGIWFGRIEP
LPARVKLAYRLDVDEWQGQKRVRFMVEAAEL
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgcaaattttgacgcgcgatgtaccgccgcgtacagcgtggacgctggaacaa
gccggtgttcaccccttgctgtcccgcttgtttgccgctaggggcattcaaagtccagat
gaacttgacgatggtttggccaaactcttgcccccccagaccttaaaaggcacagaagct
gcagccaacttgttggccgatgccatcgccgctcaaaaacgtctgtgcatcgtggccgat
tacgactgcgatggcgccacggcttgtgctgttggcctgcgcggcttgcgcatgctgggt
gcgcaacacgtgagctacatcgtgcccgaccgtgtggtcgatggctatggcctcacggcc
cccattgcacagcgcgttcaacaagcaggcgccgatgtgttgatcaccgtggacaacggc
atcgccagcatggaaggcgtggcacaagcgcaagctttgggattgcaagtgttggtcacc
gaccaccatctgcctgccgccacattgccaagcgccgatgtcatcgtcaaccccaatcaa
ccaggctgcagttttgaaagtaaagctttggccggtgtgggcgtgatgttttatgtgctg
ctggcgttgcgcgcagaactgcgcaagcgcggcctgttcacagccgagacacagcccaaa
ctggatgcactcttgcccttggtggccttgggcaccgtggccgatgtggtcaaactggac
aacaacaaccgccgcttggtggcgcaaggcttgaagcgcattcgcgcgggcgccatgccc
actggcatgttggccttgttcaaggctgcaggtcgtgatgcacgcgtggccaccaccttt
gactttggttttgcactgggcccacgcatcaatgcagcgggtcgtctgtctgatatgact
ttgggcattgaatgcctgagcaccgacgatgcagcacgcgctgatgagttggctcgtcag
ctcgacagcatcaaccgtgagcgccgcgatattgaaggcgacatgcgccagcaggccatg
gaaattgccgagtctttgatggacgacagtgaagaaccgccacccgccatttgcgtgttc
gaccccgattttcatgaaggcgtggtgggcattgtggcctcgcgcatcaaggacaaattt
caccggccttgttttgtgtttgcggccagcaatgcaccaggcaaagagcacgagctgaaa
ggctcaggtcgctccattccaggttttcatttgcgcgatgcccttgacctgatggtcaag
aaacaccctcacctgttgttgcgctttggcggtcacgccatggcggcgggttgcaccatc
gaagaagaacatttggaattgtttgaagcttgcttcatggaggtggctgcacaacttttg
tcgcccgccacattgcaacgcaaactggaaaccgatggccccttggatgcgcaatatcgc
cgcgccgagtttgtcgatgtgatgcacaaggaagtgtggggccaaggctttgcaccaccg
gtgttcagtgacgaggtggaagtggtgtcacaacgcttggtaggcgaaaaacatttggcc
ttgaaactcaaacaccaaggtcagcctgtggatggcatttggtttggccgcattgagcca
ctgcctgcgcgtgtgaagttggcttaccgcttagacgtggacgaatggcaaggccaaaaa
cgcgttcgcttcatggtggaagctgcggagctttaa
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