Limnohabitans sp. 103DPR2: L103DPR2_02740
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Entry
L103DPR2_02740 CDS
T04120
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lim
Limnohabitans sp. 103DPR2
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lim03016
]
L103DPR2_02740 (rnb)
Enzymes [BR:
lim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L103DPR2_02740 (rnb)
Transfer RNA biogenesis [BR:
lim03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
L103DPR2_02740 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
ALK93118
UniProt:
A0A0P0MJ27
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All DBs
Position
2822043..2824112
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AA seq
689 aa
AA seq
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MFLLFEEAGKFVAGRVLSEAEASVQVELDSGKRVKVKGANVLLKFDKPAPAQLLADAATI
SQSIELDLAWEFAPDTEFGFAEVAREYFNADATTAQQVGALIRLYEAPHYFRRAGKGRFK
KASAETVQLALAGIEKKKQIQAQIESWSHELMAGQCPAPIKEQLYKILFRPDKNAPEYKA
VVEASRASQTAPLTLLQNAGAIASAYDFHWQRFLFDNFPKGTGFPKLEAPAIAQELPLAN
VQAYSIDDSQTTEIDDALSLQGLGSGQVVVGIHIAAPGLAIAPNSAIDNVGRTRLSTVYM
PGYKITMLPDEVVQSYTLAEGQACPAVSLYVTLDEATLSIQHTETKLERVPINANLRHDQ
LDQWVTQAWLEDAAPAAREGEPQLPIAHSELAFFWRLAQHLKAGREVVRGKPENFNRPDY
NFRLVRDNKDTPPTGQESVQISVRQRGAPLDLIVAEAMILANSTWGQWLASLGVPAIYRS
QASMAPGVKVRMGTKALPHAGIGVPAYAWSTSPLRRYTDLVNQWQIIACAQHGATAALAA
PFKPKDAQLFAIISAFDAAYTAYNGYQSGMERFWTLQYLKQENITEVVASLVKEMAGGSW
LVRADHLPLMLTVMGASGLTRGDKVKVQLGAIDAMALDVSGTVIEKIISEHSEAEDSEAS
LDEAMEDLDEAATGPIAIALNVNEAPAEE
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtttttattgtttgaagaagctggcaaatttgttgccggacgcgtcttgtcagaggca
gaagcttcggtgcaagtggaattggacagcggcaagcgggtcaaagtcaaaggcgccaat
gtgcttttgaaatttgacaagccagcaccggcccaactcttggcagacgctgccaccatc
agccaaagcattgagcttgatttggcgtgggaatttgcgcccgacaccgagttcggtttt
gccgaagtggcccgcgagtatttcaatgcagatgccaccaccgcgcagcaggtgggggcc
ctcattcgcctctacgaagcgcctcattattttcgccgtgctggcaaaggccgattcaaa
aaggcctctgccgaaacagtgcaattggctttggcagggatagagaagaaaaaacaaatt
caagcgcagattgaaagttggtcgcacgaactgatggcgggtcaatgccctgcgcccatc
aaagagcagctatacaaaattttgttccgccccgacaagaatgcacccgaatacaaagcg
gtggtcgaggccagtcgtgccagtcaaacggcgccgctgactttgctgcaaaacgccggt
gccattgccagcgcctatgactttcattggcaacgctttttgtttgacaactttcccaag
ggcactggctttcccaaattggaggcgcctgccattgcgcaggaattgccattggccaac
gtacaggcctactccatcgacgactcacaaaccaccgaaatagacgatgccttgtctttg
caagggctgggctccggccaagtggtggtgggcattcacattgccgcccctggcttggcc
attgcgcccaacagcgccatcgacaatgtgggccgcacccggttgtccactgtgtacatg
ccgggctacaaaatcaccatgctgcccgatgaagtggtgcaaagctacaccttggccgaa
ggccaggcctgcccagcggtgtcgctgtacgtcacgttggacgaagccacgctcagcatt
caacacaccgagaccaaattggagcgcgtgcccatcaacgccaatttgcgccacgatcag
ctcgatcaatgggtgacacaagcttggttagaggacgctgcacccgcagcccgcgaaggt
gaaccacaactgccgattgcgcacagcgaattggcatttttttggcgcttggcgcaacac
ctcaaagcgggtcgcgaagtggtgcgcggcaagcccgagaatttcaatcgtcccgactac
aacttccgcttggtccgtgacaacaaagacacgccgcccacaggtcaagagtcggtgcag
atttcggtacgccaacgcggcgcacccctcgatttgatcgtggccgaggccatgatcttg
gccaacagcacatggggccaatggctggccagtttgggcgttccggccatctaccgcagc
caagccagcatggcacccggtgtcaaagtgcgcatgggcaccaaggccctgccgcatgct
ggcattggcgtgcctgcgtatgcgtggagcacttcacccttgcgccgatacaccgacttg
gttaaccaatggcaaatcattgcctgcgcccaacacggcgccacagcagcattggccgca
cccttcaaaccgaaagatgcacaactgtttgccatcatcagtgcctttgatgcggcctac
accgcttacaacggctaccaatccggcatggagcgcttttggacattgcaatacctgaag
caagaaaacatcacggaagtggtggccagtttggtcaaagaaatggcgggtggcagttgg
ttggtgcgcgcagaccacctgccactcatgctcactgtcatgggcgcatcaggcttgacg
cggggtgacaaggtcaaggttcaattgggcgccatcgatgccatggcgctggacgtcagt
ggcaccgtcatcgagaaaatcatcagcgaacattctgaagccgaggacagcgaggcaagt
ttggatgaggccatggaagatctggacgaagcggccacaggccccattgccattgcgctg
aacgtcaacgaggcgcccgccgaagaataa
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