Limnohabitans sp. INBF002: LINBF2_00350
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Entry
LINBF2_00350 CDS
T09962
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LINBF2_00350 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limi03019
]
LINBF2_00350 (recQ)
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_00350 (recQ)
Enzymes [BR:
limi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LINBF2_00350 (recQ)
Messenger RNA biogenesis [BR:
limi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LINBF2_00350 (recQ)
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LINBF2_00350 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
RtcB
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BDU51800
LinkDB
All DBs
Position
complement(43611..45509)
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AA seq
632 aa
AA seq
DB search
MSTPVNPQDILREVFGYGAFRGPQEAIVNHVCGGGDALVLMPTGGGKSLCYQIPAIARQR
AGHGITIVVSPLIALMHDQVGALHEAGVEAAFLNSSLTGEEANAVEQRLRRGDITLLYAA
PERITTPRFLAQLDALHEQGQLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYAGVPRM
ALTATADALTRADIVERLQLEDAQQFVSSFDRPNIRYTIVEKKDASTQLLRFIQREHTGP
YGQDSGIVYCQSRKRVEEVAKNLCDAGIAALPYHAGLDGAIRQKHQNRFLREDGLVMVAT
VAFGMGIDKPDVRFVAHLDMPKNIEGYYQETGRGGRDGQAAHAWMAYGLNDVVNQRRMID
ESPAGEDFKQVMRGKLDALLALAEATDCRRVRLLGYFDETYKSPENGAPRYTCGNCDNCL
NPPDIWDGTEAARMLLSTIYRVKQQSGMSFGAGHMMDILRGKATEKVNQYGHEKLSTFGI
GAHFSEVQLRGVLRQLIALGALGVDAQAFNTLYLTEASRGVLKGEVTVRLRASASTPADR
KGKRAASGASKPAPIALDDAGQQRYDALKAWRGEVARSHNLPAYVIFHDATLAAIAQAEP
HDLEALQGIAGIGAKKLEAYGDEVLRVVALPA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
gtgtccacgcctgtgaatccgcaagacatcttgcgcgaagtctttggctacggcgccttt
cgcggcccccaagaagccatcgtcaaccacgtgtgcggcggcggcgatgcgttggtgctc
atgcccacgggcggcgggaaatcgctctgttaccaaattccggccattgcccgccagcgt
gcggggcacggcatcaccatcgtggtgtcgccgctcatcgcgctcatgcacgaccaagtg
ggcgcgctgcacgaggcgggggttgaagccgcgtttttaaattccagcctcaccggcgaa
gaagccaacgcggtggagcaacgcctgcgccgtggcgacatcactctgctctacgccgcg
cccgagcgcatcaccacaccgcgttttttggcgcagctggatgccctgcacgaacaaggc
cagctcagcctgtttgccattgacgaagcgcattgcgtgagccaatggggccacgacttc
cgccccgaataccgcgccctcaccgtgctgcacgagcgctacgcgggcgtgccgcgcatg
gcgctcaccgccaccgccgatgcgctgacgcgcgccgacatcgtggagcgcttgcagctg
gaagacgcgcaacagttcgtcagcagctttgaccgccccaacatccgttacaccatcgtc
gaaaagaaagacgcgtccacccagctactgcgcttcatccagcgcgagcacacgggcccc
tatggccaagacagcggcatcgtctattgccaatcgcgcaagcgggtggaagaagtggcc
aagaacttgtgcgacgcaggcattgccgcgttgccataccacgcaggtttggatggcgcc
attcggcaaaagcaccaaaaccgttttttgcgtgaagacggtttggtgatggtcgccacc
gtggcgtttggcatgggcatcgacaaacccgatgtgcgctttgtggcgcacttggacatg
cccaaaaacatcgaaggctattaccaagaaaccggccgtggtggccgcgacggccaagct
gcgcacgcgtggatggcctacggcctgaacgatgtcgtcaaccaacgccgcatgattgat
gagagccccgcaggcgaagacttcaagcaagtcatgcgcggcaaactcgacgccctactg
gccttggccgaagccacagactgccgacgcgtgcgtctgctgggctactttgacgaaacc
tacaagtcacccgaaaacggcgcaccccgctacacctgcggcaactgcgacaactgcctc
aacccgccagacatttgggacggcaccgaagctgctcgcatgttgctgtccaccatctac
cgcgtgaagcaacaaagcggcatgtcgtttggcgcaggccacatgatggacatcttgcgt
ggcaaggccaccgagaaggtcaaccaatatggccacgagaagctcagcaccttcggcatt
ggcgcgcacttcagcgaggtgcagctgcgcggtgtgctgcgccagctcatcgcgctcggc
gctttgggtgtggatgcgcaagctttcaacaccttgtatttgaccgaggcctcgcgcggc
gtgctcaaaggcgaagtcaccgtgcgcttgcgtgcctcggcgtccacccccgctgaccgc
aaaggcaaacgcgcagccagcggcgcttccaaacccgcgcccatcgcgctggacgacgca
ggccaacaacgctacgacgcgctcaaggcttggcgtggcgaggtggcccgctcgcacaac
ttgcccgcctacgtcatcttccatgacgccacgctggccgcgattgcgcaagccgagccg
cacgacttggaagcgctgcaaggcatcgctggcatcggcgccaaaaagctcgaagcctat
ggcgacgaggtgctgcgcgtggtggccctgcccgcctaa
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