Limnohabitans sp. INBF002: LINBF2_01180
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Entry
LINBF2_01180 CDS
T09962
Symbol
mrdA
Name
(GenBank) penicillin-binding protein
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi00550
Peptidoglycan biosynthesis
limi01100
Metabolic pathways
limi01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
LINBF2_01180 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
LINBF2_01180 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
limi01011
]
LINBF2_01180 (mrdA)
Enzymes [BR:
limi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
LINBF2_01180 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
limi01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
LINBF2_01180 (mrdA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PBP_dimer_2
Motif
Other DBs
NCBI-ProteinID:
BDU51883
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Position
123603..125705
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AA seq
700 aa
AA seq
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MRVIRDIESDLRRFRSRMVVVTGAIVVLFSLLSIRLFYLQVVRYDELNAQAENNRTAIVP
IVPNRGVIMDRNGIVLATNYSAYTLEITASKVVLPLEEVIEQLSGVIDIQARDKRRFKKQ
LGESKSFESVPIRNRLSDEEVARFAAQRYRFPGVEIRARLFRNYPYNQLASHVIGYIGRI
NQAEKGKIEESDDAGNYRGTDYIGKLGVEQSYETQLHGTTGVQEMETSAGGRAVRRLNSS
QAIPGNSVVLSIDIKLQKLVEDLYGKRRGALVALDPKTGEVLAFVSKPTFDPNLFVDGID
SENWAALNESIDKPLLNRALRGTYPPGSTYKPFMALAALQTGKRAEKTLISDPGYFMFGN
HRFRDDKEGGHGAVDMYKSIVESCDTYYYTLARDMGVDLMHDQMKPLGFGQITGIDILGE
SRGVLPSTEWKRNTYKKPEQQRWYSGETISLGIGQGYNNFTMLQIAHAMGTVANNGLKMK
PHLVREVVDVETKASTLVAKEPIGQLPLSPENLEVIKKGMIGVNVEGTSATSFIGAQYVS
AGKTGTAQVFTVKQNEKYNAAAIDERMRDHALFVAFAPADDPKVALAMVVENAGFGAQNA
APIARRVFDFVITGQYPSQEDIEAVQRGQATRPIGKPRPVASVPWPPKAAELAVEEPVVA
ASAAEKAAAAAAKAASAAAKSASAAAASAAAQKPATTSPR
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagggtgattcgcgacatcgagtccgacctgcgacgcttcaggtcgcgcatggtggtg
gtgacgggtgcgattgtggtgttgtttagcctgttgtcgattcgcctgttttatttgcag
gtggtgcgctacgacgaactcaacgcacaagccgaaaacaaccgcacggccatcgtgccc
atcgtgcccaaccgtggcgtcatcatggaccgcaacggcattgtgttggccaccaactac
tcggcctacaccctcgaaattaccgcatctaaagtggtcttgccgctggaagaagtgatc
gagcagctctcgggcgtcattgacattcaggcccgcgacaagcgtcgctttaaaaagcaa
ctgggcgaatctaagagctttgaatcggtgcctattcgcaaccgattgagcgacgaagaa
gtggctcgctttgctgcgcagcgctatcgttttcctggcgttgaaattcgcgcgcgtttg
ttccgcaactacccgtacaaccaactggccagccacgtgattggctacatcggtcgtatc
aaccaagcggaaaaaggcaagattgaagagtcggatgatgcgggcaattaccgtggcacc
gactacatcggcaaacttggtgtcgagcaaagctacgaaacacagttgcacggcaccacg
ggcgtgcaagagatggaaacctcggcaggcggacgcgccgtgcgccgcctcaacagcagc
caagcgattcccggcaacagcgtggtgttgtccatcgacatcaagttgcaaaagctggtc
gaagacctctacggcaaacgccgtggcgccttggtggcccttgaccccaagaccggcgaa
gtgctggcgtttgtgagcaagcccaccttcgatcccaacttgtttgtggacggcattgac
tctgaaaactgggcggcgctcaatgagtccatcgacaagcctttgttgaatcgcgccttg
cgcggcacctacccgcccggctcgacctacaagcccttcatggctttggccgcgttgcaa
accggcaagcgtgcggagaagacactgatctccgaccccggctacttcatgtttggtaac
caccgcttccgtgacgacaaagagggtggccatggtgcggtggacatgtacaagtccatc
gtcgagtcgtgcgacacctactactacacactggcgcgtgacatgggcgtggacttgatg
cacgaccaaatgaaacccttgggttttggccaaatcacaggcatcgacattttgggtgag
tcgcgcggcgtgctgccatctaccgagtggaaacgcaacacctacaagaagccagagcag
caacgttggtattcaggcgaaaccatttcgctgggcattggtcagggttacaacaacttc
accatgctgcaaatcgcgcacgcgatgggcaccgtggccaacaacggtttgaagatgaag
ccgcatttggtgcgcgaagtggtggacgttgaaaccaaggcgtcgacccttgtggccaag
gagcccatcgggcaactgccgttgtcgccagagaatttagaggtcatcaaaaaaggcatg
atcggtgtgaacgtcgagggcacgtctgccaccagcttcattggtgcgcagtatgtgagc
gccggcaaaacgggcacggcgcaggtgttcacggtcaaacaaaacgaaaagtacaacgca
gcggccattgatgaacgcatgcgcgaccatgcgttgttcgtggcgtttgcgccagcagac
gaccccaaagtggccttggccatggtggtagaaaacgctggctttggcgctcaaaacgca
gcgccgattgcacgtcgcgtgtttgatttcgtcatcacggggcagtacccctcacaagaa
gacattgaagcggtgcaaagaggtcaggcgacacggccaattggcaaaccccgcccagtg
gccagcgtaccttggccgcccaaggcggctgagttggcagtggaagagcctgtcgtggct
gcttctgcggctgagaaagcagctgcagccgcagcaaaagccgcctcggctgctgccaaa
tctgcttccgctgctgctgcgtctgcggcggcgcaaaagccagctaccaccagcccacgc
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