Limnohabitans sp. INBF002: LINBF2_02290
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Entry
LINBF2_02290 CDS
T09962
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi00061
Fatty acid biosynthesis
limi00071
Fatty acid degradation
limi01100
Metabolic pathways
limi01212
Fatty acid metabolism
limi02024
Quorum sensing
limi04146
Peroxisome
Module
limi_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
LINBF2_02290
00071 Fatty acid degradation
LINBF2_02290
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
LINBF2_02290
09145 Cellular community - prokaryotes
02024 Quorum sensing
LINBF2_02290
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
limi01004
]
LINBF2_02290
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
limi04147
]
LINBF2_02290
Enzymes [BR:
limi01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
LINBF2_02290
Lipid biosynthesis proteins [BR:
limi01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
LINBF2_02290
Exosome [BR:
limi04147
]
Exosomal proteins
Exosomal proteins of breast milk
LINBF2_02290
Exosomal proteins of breast cancer cells
LINBF2_02290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
DUF2464
DUF5650
Motif
Other DBs
NCBI-ProteinID:
BDU51994
LinkDB
All DBs
Position
213623..215569
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AA seq
648 aa
AA seq
DB search
MQTTFPRLLLKHASERPSAPAMREKEYGIWQTTSWADMAQMVEHMACGLHQAGLTRGEHM
VVVGSNRPRLYATMLAAQSLGAIPIPLYQDAAGPECVFPLNNADVRFCVVEDQEQVDKLL
EIREQCPQIAHIFFDDPRGLRKYDEPGLASLEELLAAGAVFAKQHPGFYLDEVEKAHTDD
VGAMFFTSGTTGNPKGVVHTHNSLINRAEAGALFDKLTSHEDVLAYLPPAWIGQNIFSYA
QWLYCGYVVNCPESAATVTIDLKEVGPTYYFAPPRVFEGLLTSVMIRMEDAGAIKRNMFH
YFMDVARKYGPTKMDGKSIGLVGEVLYTLGNFFVYGPLRNNLGMSRVRVAYTAGEAIGPD
LFSFYRSIGVNLKQLYGSTETAVFVCLQPDHEARADTVGVPCAGVEIKVADNGEILVKSP
GLLKGYYKNDAATAEVLTADGWYHTSDAGFLDAHGHLKIIDRVKDVGRIKGGSNDGAMFA
PKYVENKLKFFPHIKEVVAYGDQREKVCVMINIDMEAVGNWAERQNLPYAGYTDLAQKPE
VYQLIKECVEKVNADLAADELLAGSQVSRFLVLHKELDADDGELTRTNKVRRGFIAEKYD
ALVGALYNGATEQFIETVVKFEDGRTGSVSATLKLSDAKTFAPVGKAA
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccacgttcccacgactgttactcaagcatgccagcgagcgccccagtgcgcca
gccatgcgcgagaaggaatacggcatttggcaaaccacctcatgggccgatatggctcaa
atggtggagcacatggcgtgcggcttgcaccaagccggtttgacgcgcggcgaacacatg
gtggtggtgggttccaaccgtccccgcttgtacgccaccatgttggctgcccaatcgttg
ggtgccattccaattcctttgtaccaagatgcggccggccctgaatgcgtgttcccgctc
aacaacgcggacgtgcgtttttgcgtggtggaagaccaagagcaagtggacaagctgctc
gagattcgtgagcaatgcccgcaaatcgcacacatcttttttgatgacccacgcggcttg
cgcaaatacgacgagccaggcttggcctcgctcgaagaattactggccgctggtgccgtg
tttgctaagcaacacccaggcttctatttggacgaagtggagaaagcacacaccgacgac
gtgggcgcgatgttcttcacatcgggcaccaccggcaaccccaaaggcgtggtgcacaca
cacaactcgctcatcaaccgtgccgaggctggtgccttgtttgacaagctcacctcgcac
gaagatgtgttggcgtatttgccacccgcttggattggccaaaacattttcagctacgcc
cagtggttgtattgcggctatgtggtgaactgccccgagtcagccgccaccgtcaccatc
gacttgaaagaagtcggccccacttactacttcgcgccaccccgcgtgtttgaaggcttg
ctcaccagcgtgatgattcgcatggaagacgctggcgccatcaagcgcaacatgttccat
tacttcatggacgtggctcgcaaatacggccccaccaagatggatggcaaatccatcggt
ttggtaggcgaagtgctctacaccttgggcaatttctttgtgtatggccccttgcgcaac
aacctcggcatgagccgtgtgcgcgtggcctacaccgccggtgaagcgattggtcccgat
ttgttcagcttctaccgttccatcggtgtgaacttgaagcagctttatggctccaccgaa
accgctgtgttcgtctgcttgcagcccgaccacgaagcacgcgctgacaccgtgggtgtg
ccctgtgccggcgttgaaatcaaagtggccgacaacggcgaaatcttggtcaagtcgcca
ggtttgctcaagggctattacaaaaacgacgcagccacggctgaagtgttgaccgccgat
ggctggtaccacaccagcgacgcgggcttcttggatgcgcatggccatttgaaaatcatt
gaccgtgtcaaagacgtgggccgcatcaaaggtggcagcaacgacggcgccatgtttgcg
cccaagtacgtcgagaacaaactcaagtttttcccgcacatcaaagaagtggtggcctat
ggcgaccaacgcgaaaaagtgtgcgtgatgatcaacatcgacatggaagccgtgggtaac
tgggctgagcgccaaaacctgccttacgccggctacaccgatttggcgcaaaagcctgag
gtgtatcagttgatcaaagagtgcgttgagaaggtcaatgctgatctcgctgctgacgaa
ctcttggccggtagccaagtgagccgcttcctcgtgttgcacaaagaactcgatgccgac
gacggcgaactcacccgtaccaacaaagtgcgtcgcggtttcatcgccgaaaaatacgac
gccttggtgggtgccctgtacaacggcgccaccgagcaattcattgaaaccgtggtgaag
tttgaagacggtcgcaccggcagcgtgagcgccacgctcaaactgtctgacgccaaaacc
ttcgcgcctgtggggaaagcagcatga
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