Limnohabitans sp. INBF002: LINBF2_04000
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Entry
LINBF2_04000 CDS
T09962
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
limi
Limnohabitans sp. INBF002
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
limi03016
]
LINBF2_04000
Enzymes [BR:
limi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LINBF2_04000
Transfer RNA biogenesis [BR:
limi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LINBF2_04000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
ProQ_C
Motif
Other DBs
NCBI-ProteinID:
BDU52165
LinkDB
All DBs
Position
complement(388982..391048)
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AA seq
688 aa
AA seq
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MYALFEEAGKFQTGRILSEAESSAQIELESGKRVKVKAAHLLLKFEKPSPADLMRDAQAL
SATIELDLAWEFAPEDEFGFADLAREYFSAQATLTEQAAALLRLFEAPHYFRRAGKGRFK
KASAEVIAQALAGIEKKKQIQAQIESWAAELGQGACPAPIQTQLYKILFRPDKNAPEYKA
VVEAARATQTAPLALLQKAGAITSAYQFHWQRFLFDNFPKGTNFPALQAPSIADELPLAN
VQAYSIDDSHTTEIDDALSVQGLGTGTVTLGIHIAAPALALKPGDAIDQLGRNRLSTVYM
PGYKITMLPDDVVQTYTLQEGRDCPAVSLYATFDEATLALQNTETRVERVPIAANLRHDQ
LDAIVTEAWLNDASFTHVAGTVEPAMPRTELAFLFRLAQHLKAQREVVRGKPENFNRPDY
NFRLVGNNGATPTGDEQVQISIRQRGAPLDLMVAEAMILANSTWGNWMAELGVPGIYRSQ
ASLLPGVKVRMGTKALPHAGIGVPSYAWSTSPLRRYTDLVNQWQIIACAKHGSTAALAAP
FKPKDAELFSIISAFDGAYGAYNAYQNGMERFWTLQYLKQNNITELRATVFKAFPGQPPM
ARADDLPLVLPVFGGGDLPRGAHVQLRLSEIDDISLDISGHLLHLLEADAPSSAEEAEMT
DDEDDSAAGPIALAMDVNEAPTSEVNAA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcattgtttgaagaagctggaaaattccagacgggtcgcatcctttccgaagcc
gagagctcggcccaaatcgagctggaatccggcaaacgggtcaaggtcaaggccgcccat
ttactgctcaagtttgagaagccctcgcccgccgacctgatgcgcgacgcacaggctttg
agcgccaccattgagctcgacctcgcgtgggaattcgcccccgaagacgagtttggtttt
gccgacctcgcccgcgaatacttcagcgcacaagccaccctgaccgaacaagccgctgcg
ctgcttcgcctgtttgaggcgccgcattactttcgccgcgccggcaaaggccgcttcaag
aaggcctctgccgaagtgattgcccaagccttggcaggcatcgaaaagaaaaaacaaatc
caagcgcaaattgaaagctgggcggccgagttgggccaaggcgcttgccccgcgcccatt
caaacccagctctacaaaatcttgttcaggcccgacaaaaatgcgcctgaatacaaagcc
gtggtcgaagccgcgcgcgccacacaaacagcgccattggctttgctgcaaaaagcaggc
gccatcacatcggcttaccaattccattggcaacgctttttgtttgacaacttccccaag
ggcaccaacttccctgcgctgcaagcacccagcattgccgacgaattgccgctggccaac
gtgcaggcgtattcgattgacgactcgcacaccaccgagattgacgatgccttgtctgtg
caaggcttgggcactggcacggtcacactcggcattcacatcgccgcacctgcgctggct
ttgaagccgggcgatgcgattgaccaactgggccgcaaccgcttgtccaccgtgtacatg
ccgggctacaaaatcaccatgttgcccgacgacgtggtgcaaacctacaccttgcaagaa
ggccgcgactgccccgccgtgtcgctgtacgccacgttcgacgaggccacgctggccttg
caaaacactgaaacacgcgtggagcgtgtgccgattgctgccaacttgcgccacgaccag
ctcgatgccatcgtcaccgaagcttggttgaatgacgccagcttcacgcacgttgcaggc
accgtcgagcctgccatgccacgcacggaactggcttttctgttccgcttggcgcagcac
ctcaaagcccaacgtgaagtggtgcgcggcaagcccgaaaacttcaaccgccctgactac
aacttccgcctcgttggcaacaacggcgcaacgcccacaggcgacgagcaagtgcaaatc
agcatccgccagcgcggcgcaccgctcgacttgatggtggccgaggccatgattttggcc
aacagcacctggggcaattggatggccgagctgggcgtgcccggcatctaccgcagccaa
gccagcttgttgcccggcgtcaaagtacgcatgggcaccaaggcgttgccacacgctggc
attggcgtgcccagctacgcgtggagcacctcgcccctgcgccgctacacagacctcgtc
aaccaatggcaaatcattgcgtgcgccaaacatggcagcaccgccgctttggctgcgccc
ttcaaacccaaagacgcggaactgttctccatcatctccgcgtttgatggcgcgtacggc
gcctacaacgcctaccaaaacggcatggaacgtttctggacgctgcagtatttgaagcaa
aacaacatcaccgaactcagagccaccgtgttcaaagccttccctggccaaccacccatg
gcgcgtgccgatgacctgcccttggtcttgcccgtgtttggcggcggcgatttgccacgc
ggcgcacacgtgcaactgcgcttgagcgagattgacgacatcagcctcgacatcagcggc
cacctgctgcacctgctggaagcagatgcaccatcgagtgccgaagaagcagagatgacg
gacgacgaagacgacagcgccgcaggccccatcgccttggcgatggatgtgaacgaggca
cccacatcggaggtcaatgcagcgtga
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