Limnohabitans sp. INBF002: LINBF2_04380
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Entry
LINBF2_04380 CDS
T09962
Name
(GenBank) hypothetical protein
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi02020
Two-component system
limi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LINBF2_04380
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LINBF2_04380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
limi03000
]
LINBF2_04380
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
limi02035
]
LINBF2_04380
Transcription factors [BR:
limi03000
]
Prokaryotic type
Helix-turn-helix
Other families
LINBF2_04380
Bacterial motility proteins [BR:
limi02035
]
Flagellar system
Flagellar assembly proteins
Others
LINBF2_04380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
AAA
AAA_16
HTH_50
Mg_chelatase
AAA_2
AAA_7
AAA_3
AAA_22
nSTAND3
HTH_30
AAA_30
CUE
Motif
Other DBs
NCBI-ProteinID:
BDU52203
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All DBs
Position
complement(428454..429554)
Genome browser
AA seq
366 aa
AA seq
DB search
MKPTTNFIGSSESAATLRQLVATMANSNATVMITGESGTGKELLARLLHEQSDRCGANFV
PINCAAIPKDLLESELFGHRKGAFTGAVADRIGRFELAHGGTIFLDEIGDMSLDMQVKLL
RVLQERTVDPIGGTRQVQVDVRVVAATHRDLETEIAAGRFREDLYYRLNVLPMVTPPLRE
RNDDVAELLGFFAKKCVNFGKQPIRFKADFMTALQKYPWPGNVRELSNLVDRFSTLYAGQ
ELDLRAIPPTLLPKGLVSAQAELQAQAPLLAKLEMTPPPEVLAEMNEQPEEEENEIEGII
MLAQGMPHLPPEGLSLKERMAQIERSIIEQALSRNSGNVSRTAKLLNLQRTTLIEKINKY
DLRSAA
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccacgacaaactttattggctccagcgagtcagcagccacgctgcgccaattg
gtcgcgacgatggctaactccaacgccaccgtgatgatcacgggcgagagtggcacaggc
aaagagctattggctcggctgctgcatgagcaatcggaccgatgcggtgccaactttgtg
ccgatcaactgcgcggccattcccaaagacttgttagaaagcgaactgtttggccaccgc
aaaggcgcattcacgggcgctgtggccgaccgcattggtcgctttgagctggcccatggc
ggcaccatcttcttggatgaaattggcgacatgtcgctggacatgcaggtcaagctgctg
cgcgtgttgcaagagcgcaccgttgatcccattggcggcacccgccaggttcaggtggat
gtgcgcgtggtggccgcgacccaccgagatttagaaaccgaaattgcggccggtcggttc
cgtgaagacttgtattaccgcctcaatgtgctgcccatggtgaccccgccgttgcgtgaa
cgcaacgatgacgtggccgagttgttgggattctttgccaagaaatgtgtcaactttggc
aagcaacccatccgcttcaaggccgacttcatgacggccctgcaaaagtacccttggcct
ggcaacgtgcgcgagttgtccaacttggtcgatcgtttcagcaccctgtacgcgggccaa
gagctggacttgcgcgccatcccccctaccctgttgcccaagggtttggtgtcggcccaa
gccgagcttcaagcccaagcaccgctgctggccaaactggaaatgacaccgccccccgag
gtgctggccgaaatgaacgagcagccagaggaagaggaaaacgagatcgagggcatcatc
atgttggcccaaggcatgcctcatttgccacccgaaggcttgtcgctcaaagagcgcatg
gcacagattgagcgcagcatcattgagcaggcgctgagccgcaactcgggcaatgtgtca
cgcacagccaagttgctcaatttgcagcgcaccaccttgattgagaagatcaacaagtac
gacctgcgctcagcggcttaa
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