Limnohabitans sp. INBF002: LINBF2_05610
Help
Entry
LINBF2_05610 CDS
T09962
Symbol
recC
Name
(GenBank) RecBCD enzyme subunit RecC
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LINBF2_05610 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_05610 (recC)
Enzymes [BR:
limi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LINBF2_05610 (recC)
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LINBF2_05610 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
FAM199X
Motif
Other DBs
NCBI-ProteinID:
BDU52326
LinkDB
All DBs
Position
complement(550292..554026)
Genome browser
AA seq
1244 aa
AA seq
DB search
MLTDYCKYLAPFFARSAHMSSPHATGFMVLHSNQLEGLRELAVQFIRNHPLPVLAPEVLL
VQSNGMKHWLELALAKDLGICAATQVELPSTKLWQIYRAVLGPDSVPAHMPLDKSPLVWR
IMRRLPDLLAKPSFAPLKNYLGQAEADASPMNRRAYQLAAQLADVLDGYQNYRADWLEDW
ANHKDTLRTQAGMATPLPAAQSWQPELWRDLLDDLAADAEVKAALNTDTQHSYSSRAKVH
EAFMAKMASLHELNDGNGQRPAGVPHRIMVFGVTSLPMQTVQALAALGRVCQVLMLVQNP
CQHYWGHVVESRVPLAKLSKQRQAHKAGLPVPQDDGSLSEADQYTLHTDTHPLLAAWGKH
GRDYLHLLDGFDDVDQYKGQFNRVDVFVDPADTAAEEGREPTMLEHLQSSLLNLAPLPDH
LTDVPANDSSVHFVQTHSAQREVEVLHDRLLAWLDADPTLKPSDIMVMVPDMANFAPHIH
AVFGRFAHNAQTHDPRHLPYTVADTTPRTEPLVQALDTLLQLPQLRVTRVEWQSLFEVAA
VRERFGLEEHDVAQLDSWLADAGVRWGLDAPHRKPWGIAPDMADANQNSWLFGVERLLLG
YAVGTSRLVSTDAAHTDNTHDTWATPWLDTLPQPGVGGLDARVVDGLLQWLRHTQIALLK
LRQDHTPTEWVAVLQQLVALFFKPSDEADERLMERVMAPLETWLAECQLARLDSPLPLVV
VREHWMAQLQQPAMQRRFFGGGVQFATLMPMRSIPFKCVCLLGMNDGDYPRSQTPRDFDL
MSDAAHAGSTQSHWRAGDRSRREDDRYLFLEALLSARDKLYISWQGRRTTDHEIKPPSVL
VAQLMDYLNAVWTRDGGVACDAPLQPLQAFSPKYFTQDSAFQTYADDWQRALPSSATMQV
VSATSSAASNGTTLTSSSAASASTATTELTLQHLQRLLRQPVEVFLVDRLRLRLDQPEEA
AEEEEPFSLDGLEKYKLNQRIAQADDAQQAIAQLRLSGQLAMAGFGEAQQHLFENDREKL
REQLDVLLPKWPSTLSVQSARWQLGHTHLSAEWANGQTMWHTNGKAHNAGQQWLQVALRP
GAVTEGKKENQVPRLDTLSQLWLHHLAACASGTPTTSVQIGFDAAIELKPIDADTAQAHL
QDLCDVYSEAWTQPLPVAGKTACAFVMGVYGGSKDAMGKAQAAFEGGFGKSGEYTDSPAL
QRVFTSFEEMEASLNHWATRLYEPMFKAAKVIHLNADSTEEADA
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgctcactgactactgcaaatatttagccccttttttcgcccgttctgcccacatgtct
agcccccacgccaccggttttatggtgcttcacagcaaccagctagagggcctgcgcgag
ttggcggtgcagttcatccgcaaccacccgctgcccgtgctcgcgcccgaggtgttgctg
gtgcaaagcaacggcatgaagcattggctagagctggccttagccaaagaccttggcatt
tgcgcggccacgcaggtggagctgccatcgacgaagctgtggcagatttaccgtgcggtg
ttggggcctgacagcgttcccgcgcacatgccgctggacaagtcgccgttggtgtggcgc
atcatgcgccgcctgcccgacttgttagccaagcccagctttgcgccactgaaaaattac
ctaggccaagccgaggctgatgcgtcgcccatgaaccgccgcgcctaccaactggccgcg
cagctggccgacgtgctggacggttaccaaaactaccgcgccgattggctagaagactgg
gccaatcacaaagacacactgcgcacccaagcaggcatggccacgcccctgcccgccgca
caaagctggcagcccgaactgtggcgcgatttgctagatgaccttgcggctgatgccgag
gtgaaggctgctttaaacactgatacccaacacagctacagttcacgtgccaaagtgcac
gaagcgttcatggccaagatggccagcctgcatgaattgaacgatggcaatggccaacgc
cctgcgggtgtgccgcatcgcatcatggtgtttggtgtgacgtcgctgcccatgcaaacc
gtgcaggcgctggccgctttgggccgcgtgtgccaagtgctcatgctggtgcaaaacccc
tgtcagcactactggggccatgtggtggaaagccgcgtgccattggctaagttgtctaag
caacgccaagcacacaaagccggtttgcccgtgccgcaagacgatggctcgctgtctgag
gccgaccaatacaccctacacaccgacacgcatcctctgctggctgcatggggcaaacat
ggccgcgactatttgcatttgctcgatggctttgacgatgtggaccaatacaaaggccag
ttcaaccgcgtggatgtgtttgtcgaccccgcagacacagcggccgaggaaggccgcgag
cccacgatgctggagcacttgcagtcgtccttgctcaacctcgcgccactgccagatcac
ttaaccgacgtacctgcaaacgacagcagcgtgcactttgtgcaaacacactcagcccag
cgcgaggtagaagtgctgcacgaccgactgctggcgtggctggatgcagaccccacgttg
aagcccagcgacatcatggtgatggtgcccgacatggccaactttgcgccgcacatccac
gcggtgtttggtcgctttgcccataacgcccaaacccatgacccgcgccacctgccctac
accgtggccgacaccacaccgcgcaccgaacccttggtgcaagcactcgacaccctgctg
caactgccccaactgcgcgtgacgcgcgtggagtggcaaagcctgtttgaagtggccgct
gtgcgcgaacgtttcggcctagaagagcacgacgtggcccagctcgacagttggttagcc
gacgccggcgtgcgctggggcctagacgccccacaccgcaagccctggggcatagcaccc
gacatggccgatgccaaccaaaacagttggctgtttggtgtggaacgtttgctgctgggc
tacgccgttggcacatcccgcttagtcagcaccgatgccgcgcacaccgacaacacccac
gacacatgggccacaccttggctcgacaccttgccccagccgggcgtaggcggcctcgac
gcacgcgtggtcgatggcctgttgcaatggctgcgccacacacaaattgccttgctcaaa
ctacgccaagaccacacacctaccgaatgggtggcggtgttgcagcagctcgtcgctttg
ttcttcaagcccagcgacgaagcggatgagcgtttgatggaacgcgtgatggccccgcta
gaaacatggctggccgaatgccaactggcccgcctcgacagcccactgccactggtggtg
gtgcgcgaacactggatggcgcagctgcaacagcctgccatgcaacgccgcttctttggc
ggtggcgtgcagttcgccacgctcatgcccatgcgctccatcccgttcaagtgcgtgtgc
ttgctgggcatgaacgatggcgactacccacgcagccaaaccccacgcgacttcgatttg
atgagcgatgccgcacacgcaggcagcacccaatcacattggcgcgcaggcgaccgctcg
cgccgcgaagacgaccgctatttgtttttagaagcattgctgtcggcgcgcgacaagctc
tacatcagctggcaaggacggcgcacgaccgaccacgaaatcaaaccaccctcggtgttg
gtggctcaactgatggattacctcaatgcggtatggacgcgtgatggcggtgtggcgtgc
gatgcgccgctgcaaccgcttcaagcgttttcgcccaagtacttcacgcaagactcggcg
tttcaaacctatgcggatgattggcagcgtgcattgccttcaagcgcaacgatgcaagtg
gtttcagcaacgtcgagcgctgcaagcaatggaaccacgttgacaagcagctccgccgca
tctgcatccacggccaccaccgagctgacgctgcaacatttgcagcgcttgctgcgtcaa
cccgtagaagtgtttttggtggaccgcttgcgcttgcgcctagaccaacccgaagaagcg
gccgaggaagaagaacctttctcgctcgacggtttagaaaaatacaaactcaaccaacgc
attgcacaagccgacgatgcgcagcaagccatcgcccaactgcgcttgagtggtcaactg
gccatggccggttttggcgaagcgcaacaacacctgtttgaaaacgaccgcgaaaaactg
cgcgaacaattggatgtgttgctacccaaatggcccagcaccttgagcgtgcaatctgcc
cgctggcaactgggccacacgcacctgagtgctgagtgggccaacggccaaaccatgtgg
cacaccaacggcaaagcgcataacgctgggcaacagtggctgcaagtggccctgcgtcca
ggtgcggtgaccgaaggcaaaaaagaaaaccaagttcctcgcctcgacacactcagccaa
ctgtggctgcaccacttggcagcctgcgccagtggcacgcccaccaccagcgtgcaaatt
ggttttgatgccgccatcgaactcaagcccatcgacgcagacacggcacaagcgcatttg
caagatctgtgcgatgtgtattcagaagcatggacacagcccttgcctgtggcgggcaaa
accgcctgcgcgtttgtgatgggcgtgtacggcggcagcaaagacgcgatgggcaaagcg
caagctgcctttgaaggcggctttggcaagagcggcgaatacacagactcgcccgccctg
caacgcgtgttcaccagttttgaagagatggaagccagcctgaaccattgggccacccgc
ttgtacgagcccatgttcaaagccgccaaggtgattcacctgaatgccgacagcaccgaa
gaggctgacgcatga
DBGET
integrated database retrieval system
