Limnohabitans sp. INBF002: LINBF2_06560
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Entry
LINBF2_06560 CDS
T09962
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LINBF2_06560 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limi03019
]
LINBF2_06560 (rhlE_1)
Enzymes [BR:
limi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LINBF2_06560 (rhlE_1)
Messenger RNA biogenesis [BR:
limi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LINBF2_06560 (rhlE_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
BDU52421
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All DBs
Position
648815..650311
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AA seq
498 aa
AA seq
DB search
MRQYAPDMTTSFSNLQLAPALARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGK
TAAFSLPLLQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIKQYAVHTNLRSAVV
FGGMDMKPQTLELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPD
LQRILSHLPKQRTTLLFSATFSTEIKRLAGSYLQNPVTIEVARPNETAATITQQFYSVSV
DDKYNALRHLIKANGMKQAFVFCNSKLGCARLARSLERDGFRTSALHGDKSQDERLKALE
GFKKGEVDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGALGHAISFV
SGSDQRLVGDIEKLLKTKINLETVGVEQDRSRERREPRSDSREPRGDSSRGERSESSSRP
REGYASRDARPREQDNGRRNREVGYMPAPRVKNDPFFDKPYEAPVRSAEAAPVAPDPLRK
SSNIKPKRVMAALFKSTT
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgcgacaatatgccccagacatgacgacctctttttccaatttgcagctggcccccgcg
ctggcacgtgccgtagccgaaatgggctacgaatccatgacccccatccaagcccaggcc
attcccgtggttctgaccggccaagacgtgatgggcgccgcgcaaaccggtaccggtaaa
acggccgcgttctcgctgcctttgctgcaacgtttgctcaaacacgaaaacagctccacc
tcgcccgcacgccaccccgtgcgcgcactggtgctgttgcccacccgcgagctggccgac
caagtggcccagcaaatcaaacaatacgccgtgcataccaacttgcgcagtgctgtggtg
tttggtggcatggacatgaagccccaaactctcgagctgaaaaaaggcgttgaggtcttg
gtggccacgcccggccgtttgttggatcacatcgaagccaagaacgtggtgttgaaccaa
gttgaatacgtggtgctcgacgaagccgaccgcatgttggacatcggcttcttgcctgac
ttgcagcgtatcttgagccacttgcccaagcagcgcaccacgctgttgttctcggccacg
ttctcgaccgagatcaagcgtttggcgggcagctatttgcaaaaccctgtcaccatcgaa
gtggcgcggcctaatgagacagccgccaccatcacgcagcagttctacagcgtgagcgtg
gacgacaagtacaacgccttgcgccacctcatcaaagccaacggcatgaagcaagccttt
gtgttttgcaacagcaaactcggctgtgcgcgtttggcccgctcactcgaacgcgatggt
ttccgcaccagcgccttgcacggcgacaagagccaagacgaacgcttgaaagccctcgaa
ggtttcaagaaaggcgaagtcgatttattggtctgtaccgatgtggccgcgcgcggcttg
gacatcaaagacgtgccagctgtgttcaactttgacatcccgttcaacgccgaagactat
gtgcaccgcattggccgcacaggtcgcgccggtgcattgggccacgccatcagctttgtg
tcgggcagcgaccaacgcttggtgggcgacattgaaaaattgctcaagaccaagatcaac
ttggaaaccgtgggtgtggagcaagaccgttcgcgtgaacgtcgtgagcctcgcagtgat
tcccgcgagccgcgtggcgactcttctcgtggcgaacgctcagagtcttccagccgtcca
cgcgaaggctacgcctcacgtgatgcacgtcctcgtgagcaagacaatggccgtcgcaac
cgcgaagtgggctacatgcccgcaccgcgcgtgaagaacgacccgttctttgacaagccc
tacgaagcgcccgtacgcagcgccgaagcagcgcctgtggcgcccgatcctttgcgcaag
tcgtcgaacatcaagcctaagcgggtgatggcggctttgtttaagtcgaccacttaa
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