Limnohabitans sp. INBF002: LINBF2_07290
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Entry
LINBF2_07290 CDS
T09962
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LINBF2_07290 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limi03019
]
LINBF2_07290 (rhlE-2)
Enzymes [BR:
limi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LINBF2_07290 (rhlE-2)
Messenger RNA biogenesis [BR:
limi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LINBF2_07290 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
UvrD-helicase
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
BDU52494
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All DBs
Position
complement(724476..726338)
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AA seq
620 aa
AA seq
DB search
MKFEDLNLAPAIQKAVAEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HKLTMSRSKENKFGVYGVRALVLTPTRELAAQVEESVRNYGKYLQLTSTVIFGGVGMNPQ
VARIKKGVDILVATPGRLLDLQQQGLLDLSTVEILVLDEADRMLDMGFIHDVKKILALVP
KDKQSLLFSATFSDEIRELANNLLKDPQSIQVTPSNTTVQRITQVVHPVGRGKKKALLAH
IINEHNWSQVLVFTRTKFGANNVAEFLTKNGISAMALHGNKSQTARTQALSGFKTGEIRA
LVATDIAARGIDIDELPHVVNYEIPNISEDYVHRIGRTGRAGSSGEAVSLVSLDEQGFMR
DIEIFTKQQVPVVAVEGFGPDADEKAEPIAMGRQTLWGGLGKPPGRDVMAAAAKAARGEM
MQRIRDTKAAGGGRNGGGGRGGQGGGGAEGRAPRPSGHVSRDRVGDRPARDGERAQFGDR
PPRSGERPARDGNRPQGQGARPPRQFDNRGPRNDAPRPPRDFDAPRAPRRDDDEFQPRAN
AHLGTQSGVNAFGHKTQGGGQRQPDPTRTSVDLMTERKRGGGGGGGYGRRSGGGGGGGNR
SGGGGRSGGGFGGGGGGYAR
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagatttaaatttggctccggccatccaaaaagctgtggccgaacagggc
tacgaaacccccacccccatccaagcccaagccattccagcggtcctcgctggccacgac
ttgttggcaggcgcccaaaccggcaccggtaaaacagcagccttcaccctgcccatgctg
cacaagctcaccatgagccgcagcaaagaaaacaaatttggcgtgtacggcgtgcgcgcc
ttggtgctgacccccacccgcgaactcgcggcccaagtggaagagtcggtgcgcaactac
ggcaaatacctgcagctgacctccaccgtcatctttggcggcgtgggcatgaacccgcaa
gtggctcgcatcaaaaaaggcgtggacattttggtggccacccctggccgcctgctcgac
ttgcaacagcaaggcctgcttgatttgtcgaccgtggaaatcttggtactcgacgaagcc
gaccgcatgttggacatgggcttcatccacgacgtcaagaaaatcttggcgttggtgccc
aaagacaaacaaagcttgttgttctctgccaccttcagcgacgaaattcgcgagctggcc
aacaacttgctcaaagacccacaaagcatccaagtcacgcccagcaacaccacggtgcaa
cgcatcacgcaagtggttcaccctgtgggccgtggcaagaaaaaggctttgctcgcacac
atcatcaacgagcacaactggagccaggtgctggtgttcacacgcaccaagtttggcgcc
aacaacgtggccgagttcttgaccaagaacggcatcagcgccatggcgctgcacggcaac
aagagccaaaccgcacgtacacaagcgttgtcaggcttcaagaccggcgaaatccgagcc
ttggtggccaccgacatcgcggcacgcggcattgacattgacgagttgccacacgtggtc
aactacgaaatccccaacatcagcgaagactatgtgcaccgcattggccgcacaggccgt
gctggttcaagcggcgaagccgtgagcttggtgtcgttggacgaacaaggtttcatgcgt
gacattgaaatcttcaccaaacaacaagtgcctgtggtggccgttgaaggctttggccca
gatgcggacgaaaaagccgagcctatcgccatgggccgtcaaaccctgtggggtggctta
ggcaagccaccaggccgtgacgtcatggcagcagcagcgaaggctgcgcgcggcgaaatg
atgcaacgcattcgcgataccaaagctgctggcggcggtcgcaatggtggtggcggtcgt
ggtggacaaggtggtggcggcgcagaaggtcgtgccccacgccccagcggccatgtgagc
cgtgaccgcgtgggtgatcgccccgcgcgcgatggtgaacgcgcccaattcggtgaccgg
cccccacgcagcggcgagcgtcctgcacgtgatggcaatcgcccacaaggtcaaggtgct
cgtccaccccgtcaattcgacaaccgtggcccacgcaacgatgcaccacgcccaccgcgt
gatttcgatgcgccccgcgccccacgtcgcgacgacgacgagttccagccccgcgccaac
gcgcacttgggcacccaaagcggcgtgaacgcctttggccacaaaacacaaggtggcggt
caacgtcaacctgaccccacacgcaccagcgtggacctcatgaccgaacgcaaacgcggc
ggtggtggtggcggtggctacggccgccgttcaggtggtggtggcggtggtggcaatcgc
tctggtggtggtggccgttcaggcggtggctttggtggtggtggcggcggttacgcacgc
taa
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