Limnohabitans sp. INBF002: LINBF2_07500
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Entry
LINBF2_07500 CDS
T09962
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
limi
Limnohabitans sp. INBF002
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
limi03016
]
LINBF2_07500
Enzymes [BR:
limi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LINBF2_07500
Transfer RNA biogenesis [BR:
limi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LINBF2_07500
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
S1
Motif
Other DBs
NCBI-ProteinID:
BDU52515
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Position
744482..745954
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AA seq
490 aa
AA seq
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MGYKHFLGRSDLSLIAGQAMIERGLEPEFSRAALQELKAIAHAGQDIDPRVVDMTAWLWC
SIDNDDSRDLDQLTVAEKQADGQTKVWVAVADVDVLVPKSSALDAHAKHNTTSVYTSTRI
FPMLPDRLCTDLTSLNPHQERLAVVVEMCINANAEVTHSQLYRAKVHNKAKLAYDAISDW
IEGDEALPDPAQAVHGMAEQLLLQDAVAQSLRARRHAHGSLEFETLQPHAVFEGERVVAI
RQQVQNRARQLIEEFMIAANTCTAQFLAHHGHASLRRVVRSPERWQRIVALAATYDEHLP
PEPDSSALETFLAKRHKADPVRFPDLSLIVVKLMGSGEYVVERANSEAIGHFGLSVRDYT
HSTAPNRRYPDLVTQRMIKSVLMGAPAPYSSAELESLALHCTQQEDAARKVERRMRKSES
ALMLAGHIGQVFEAVVTGKTSSGTWVRVFSPPVEGMLTSYTSDHEVGELLRVKLIHTNVE
QGFIDFAAWG
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggggtacaaacactttctcggtcgttcagatttgtcattgattgcggggcaagccatg
atcgagcgtggtttagagcccgagttttctcgggcggccttgcaagaactcaaggccatc
gcgcacgccgggcaagacatcgacccgcgcgtggtggacatgacggcttggttgtggtgc
tccatcgacaacgatgactctcgcgacctagaccaactcaccgtggcagaaaaacaagcg
gatggccaaaccaaggtgtgggtagccgtggccgatgtggatgtgttggtgcccaaaagc
tctgccctggatgcgcacgccaaacacaacaccacctcggtgtacacctcgacgcgcatt
ttccccatgctgcccgatcgcttgtgcacggatctcacctcgctcaatccgcatcaagaa
cgtttggccgtggtggtggagatgtgcatcaatgccaatgccgaagtgacccacagccag
ctctaccgcgccaaggtgcacaacaaagccaagctggcctacgacgcgatttctgattgg
attgaaggcgacgaagctttgcctgatccggcgcaagcggtgcatggcatggctgagcag
ttgctgttacaagacgcggtcgctcagagtctgcgcgcacgtcggcatgcccacggttcg
ttggagtttgaaaccttgcaaccccatgcggtgtttgaaggcgagcgtgtggtggcgatt
cgccaacaagtgcaaaaccgtgcgcgtcagttgattgaagaattcatgattgcggccaac
acctgcacggcccaatttttggcacatcacgggcacgcctcgctgcgccgcgtggtgcgc
tcgccagagcgttggcagcgcatcgtggccttggccgccacgtatgacgaacatttgccg
cccgagcccgattcgtccgccttagaaactttcttagccaagcgccacaaagccgaccct
gtgcgctttccggatttgtcattgatcgtcgtcaagctcatgggctcgggtgaatatgta
gtggagcgcgccaacagcgaagccattggccactttggcttgtccgtgcgcgactacacc
cactccacggcacccaaccgccggtaccccgacttggtgacacagcgcatgatcaaaagc
gtgttgatgggcgcgcctgccccctacagcagcgccgaattagagtcgctggccttgcat
tgcacccagcaagaagatgccgcacgcaaagtggagcgccgcatgcgtaaatccgaatct
gccttgatgctcgcgggccacatcggtcaggtgtttgaggccgtggtcacgggcaaaacg
tccagcggcacctgggtgcgggtgttttcgccaccggttgaaggcatgctcacgtcctac
acctcagaccatgaggtgggtgaactgttgcgcgtgaaattgatccacaccaatgtcgaa
caaggcttcattgacttcgctgcttggggttga
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