Limnohabitans sp. INBF002: LINBF2_08860
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Entry
LINBF2_08860 CDS
T09962
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03030
DNA replication
limi03430
Mismatch repair
limi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LINBF2_08860 (dnaE)
03430 Mismatch repair
LINBF2_08860 (dnaE)
03440 Homologous recombination
LINBF2_08860 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
limi03032
]
LINBF2_08860 (dnaE)
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_08860 (dnaE)
Enzymes [BR:
limi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LINBF2_08860 (dnaE)
DNA replication proteins [BR:
limi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LINBF2_08860 (dnaE)
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LINBF2_08860 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BDU52651
LinkDB
All DBs
Position
874515..877985
Genome browser
AA seq
1156 aa
AA seq
DB search
MFVHLRLHSEFSVVDGTNRIDEVVKAAATDQQPALAITDINNLYGAIKFYKETRGKGVKP
VIGAEIYLESLTQDAAQTSRMVLLVQNHQGYLNLCELISRGWTQNVHRAVAVIKLEWLQE
LSQGLIALSGAQAGAVGQALVQGDTTRAGEVALQLAGIFPHRFYIELQRAGRADDDTHVS
GAVQLAARLSLPVVATHPVQFTQPDDYEAHEARVCIAEGEILGNQRRVRKFTREQYFKSS
AQMCELFADVPSAIANTVEIAKRCNLTLVLGKPQLPNFPIPPVNGVVMSVEAYFRHVSHE
GLEARLLHLYPVEAKRNEERPRYVERLEFELNTILNMGFPGYFLIVGDFIQWAKANGCPV
GPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQTNRDRVIDYV
KDKYGRDAVSQIATFGTMAARAAIGDVGRVLDMSYTFCKGISGLIPNKPGQHITIAGAIE
VEPILAERLAKEDEVKTLLELAQKLEGMTRNVGMHAGGVLIAPGKLTDFCPLYQQPGSES
AVSQFDKDDVEAAGLVKFDFLGLATLTILEIAREFIMARHKGQENFAFENIPLDDKRTYE
LFQDGKTEAVFQFESRGMQGMLRDARPTRLEDLIALNALYRPGPMDLIPSFVARKHGRET
IEYPHPMVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADMLRRAMGKKKPEEMAEHRE
IFRAGAAKNNITQDKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVHYTAEFFCA
NMTVEMDNTDKLKVLFEDAHKMGLTFEAPDVNRGFYRFEPISDKVIRYGLGAIKGSGQQA
IEAIVAAREEGPFTSLFDFCRRVDRSRLNKRTVEALIKAGAFDNLHLNRAELLASVERAF
DFASASEANANQGGLFDMMGEDAHGSSTQEPEYVEMLPWGVKERLTHEKVALGFYLSGHL
FDEVEREVRRFARTRIEDLMDSREPQLLSGIVSDMRVINGQRGKLAIFKLDDKSAVIEAT
ADEATINTYRNTLKDDELVIIMGKAQPDRFSGGLRLSIQQVWSLEQARCRFGKYLSVTVN
GTSPDIARMLRDHPAKVEQSEQGELVRGMGVRLKLLRDGATADVQLGDSAKFFPSDAALA
SWMAQAHDGQSHIIYE
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcacctgcgcctccattctgaattttctgtcgttgacgggaccaaccgcatc
gacgaggtggtgaaagcagccgcaaccgaccagcaacccgcactggccatcacagacatc
aacaacctgtatggcgcgatcaagttttacaaagaaacccgtggcaagggcgtcaagcca
gtcatcggcgccgagatttacctagagagcctcacccaagacgccgcgcagacctcgcgc
atggtgctcttggtgcaaaaccatcagggttacttgaacctgtgcgaactcatcagccgt
ggctggacacaaaacgtgcacagagccgtggctgtgatcaagctggaatggctgcaagag
ttgtcgcaaggcctgattgctttgtcgggcgcgcaagccggtgcagtgggccaagccttg
gtgcagggcgacaccacacgtgcaggcgaggtggcgttacagctggcgggcatctttcca
catcgtttctacattgagctgcagcgcgcaggtcgtgcggatgacgacacccatgtgtca
ggcgcggtgcaattggccgcgcgtctgagcctacccgtggtggccacacaccctgtgcag
ttcacccagcccgatgactacgaggcgcacgaagcgcgtgtgtgtattgccgaaggcgaa
atcttgggcaaccaacgccgtgtgcgcaagttcacacgtgagcagtatttcaaatcatcc
gcacaaatgtgcgagctgtttgccgatgtgcccagtgccattgccaacacggtggagatt
gccaagcgttgcaacttgaccttggtgctcggcaagccgcagctgcccaacttccccatc
ccgcctgtgaacggtgtggtgatgtctgtggaagcgtatttccgccacgtgtcgcacgaa
ggcctcgaagcacgcttgttgcacctgtatccggtggaggccaaacgcaacgaggagcgt
ccacgctatgtggaacgcttggagtttgagctgaacacgattttgaacatgggctttccc
ggctacttcttgatcgtgggtgacttcattcaatgggccaaagccaatggctgccctgtg
ggcccaggccgtggctcgggtgcgggctcactcgtggcgtacgccctgaagatcaccgac
ctcgacccgctgcaatacaacttgctgttcgagcgtttcttgaacccagagcgggtctcc
atgcccgactttgacattgacttttgccaaaccaaccgcgaccgcgtgattgactacgtg
aaagacaaatacggccgtgatgccgtgtcgcaaattgccaccttcggcaccatggccgcg
cgcgccgccatcggtgacgtgggccgtgtgctcgacatgagctacaccttctgcaagggc
atcagcggcttgattcccaacaagccgggacagcacatcaccatcgcgggtgcgattgag
gtcgagcccatcttggccgagcgtttggccaaagaggatgaagtcaaaacattgttggag
ctcgcgcaaaagctcgaaggcatgacgcgtaacgtgggcatgcacgccggtggtgtgttg
attgcgccgggcaagttgaccgacttttgtccgctgtatcaacagccgggcagcgaatcg
gcggtgagccagtttgacaaagacgacgtcgaagccgcgggcttggtgaagttcgacttt
ttgggcttggccacgctgaccattttggagatcgcgcgcgagttcatcatggctcgccac
aagggccaagagaacttcgcgtttgaaaacatcccgctcgacgacaagcgcacgtacgaa
cttttccaagacggcaaaaccgaagcggtgttccagtttgaaagtcgcggcatgcagggc
atgttgcgcgatgcgcgtcccacgcgtttggaagacttgattgcgttgaacgccttgtat
cggcccggcccgatggacttgattcccagcttcgtggcgcgtaagcacggacgcgaaacc
atcgagtacccacaccccatggtggccgagatgctgtctgagacctacggcatcatggtg
taccaagagcaggtgatgcagaccgcgcagattttgggcggctactcactcggtggcgcc
gacatgttgcgccgcgccatgggtaaaaagaagcccgaggaaatggcagagcaccgcgaa
atcttccgcgcgggtgctgccaaaaacaacatcacccaagacaaagccgacgaaatcttt
gacttgatggagaagttcgcgggctatggctttaacaagtcgcacgcggctgcttattcg
ttgctggcctatcacaccggttggttgaaggtgcattacacggctgagttcttctgcgcc
aacatgacggtggagatggacaacaccgacaagctcaaggtgttgttcgaagatgcccac
aagatgggcctgacgtttgaagcgcccgatgtgaaccgaggcttctaccgcttcgaacct
atttcagacaaagtcatccgctacggtctgggcgccatcaaaggctcaggccaacaagcg
attgaagccatcgtggctgcgcgcgaagaggggccattcaccagcttgtttgatttctgc
cgccgtgtggaccgcagccgtttgaacaaacgcacagtcgaagccctcatcaaagccggt
gcgtttgacaacttgcacctcaaccgtgccgagctgttggccagcgtggaacgtgcgttt
gactttgcctctgccagcgaagccaacgccaatcagggcggcctgtttgacatgatgggc
gaagacgcccacggctccagcacgcaagaacccgagtacgtagagatgctgccttggggc
gtgaaagaacgcctcacgcacgaaaaagtggcactgggcttttacttgtctggccacttg
tttgacgaagtcgagcgcgaggtgcgtcgctttgcccgcacccgcattgaagacttaatg
gactcgcgcgagccacagttgttgtcgggcatcgtcagcgacatgcgtgtcatcaacggg
caacgcggcaagctcgccatcttcaagctggacgacaaatcagcagtgattgaagccacg
gctgacgaggccaccatcaacacctaccgcaacaccttgaaagatgacgagctggtcatc
atcatgggcaaggcgcagcccgatcgtttttcgggcggcttgcgtttgtccatccagcaa
gtgtggagcttggagcaagcgcgttgccgctttggcaaatacctcagcgttactgtcaac
ggcacatcgcccgacattgcccgcatgctgcgtgaccaccccgcgaaagtggagcaatcc
gagcagggcgaattggtgcgcggcatgggcgtacgattgaagttgctgcgcgacggcgcc
acggctgatgtacagctgggcgatagcgccaaatttttccccagcgatgcggccttagcc
agttggatggcacaggcccatgatgggcaatctcacatcatttacgagtaa
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