Limnohabitans sp. INBF002: LINBF2_09940
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Entry
LINBF2_09940 CDS
T09962
Symbol
uvrB
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LINBF2_09940 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_09940 (uvrB)
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LINBF2_09940 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LINBF2_09940 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
Kinesin
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BDU52759
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All DBs
Position
983577..985694
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AA seq
705 aa
AA seq
DB search
MSDTAATLPDTLPAAVDAPKGTMVRYPGSPFELFQPYPPAGDQPTAIAQLVEGVNDGEVF
QTLLGVTGSGKTFTMANVIAQLGRPAIIFAPNKTLAAQLYSEFREFFPNNAVEYFVSYYD
YYQPEAYVPQRDLFIEKDSAINEHIEQMRLSCTKSILERRDVIVVATVSAIYGIGEPESY
HQMIMTLRAGDKVGQRDAIAQLVRMQYERNDQDFSRGKFRVRGDTIDVFPAEHSELAIRI
ELFDDEIESLQLFDPLTGRIRQKIPRFTIYPSSHYVTPRDRVLAAVETIKVELADRLKEL
VGMNKLVEAQRLEQRTRFDLEMLSEVGHCKGIENYTRHLSGAPPGAPPSTLTDYMPKDSV
MFLDESHVMIGQLGGMYNGDRARKTTLVEYGFRLPSALDNRPLKLDEFEKRMRQVVFVSA
TPADYEKTHASKVVEQLVRPTGLVDPLVEVRPATHQVDDVLQEIRIRVEINERVLITTLT
KRMAEQLTDYLTDNGVKVRYIHSDVDTVERVEILRDLRLGTFDVLVGINLLREGIDLPEV
SLVAILDADKEGFLRSERSLIQTIGRAARNLSGKAILYADRMTESMKKAIGETERRRTKQ
IAHNLEMGITPRGVVKGIRDLIDGVYSEKAGKEAQERELQRAAIEDMSERDVAKEIKRLE
KLMMEHARNLEFENAARVRDQLAVLREQAFGGAGHDNVSVLAQKL
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaccgcagcaacacttcctgacacattgccagccgccgtagatgcgcccaaa
ggcacgatggtccgctaccccggctcgccgtttgagctgtttcagccgtacccacctgcg
ggcgaccagcccacggccattgcccagctggtggaaggtgtcaacgacggtgaggtgttt
caaacgcttttgggcgtgacgggctcgggcaaaaccttcaccatggccaacgtgatcgcc
caattgggtcgacctgccatcatttttgcgcccaacaaaaccttggcggcgcagctctac
agcgagttccgcgagttttttccaaacaatgcggtggagtatttcgtcagctactacgac
tactaccagcccgaggcctatgtgccccagcgtgatttgttcatcgagaaagacagcgcc
atcaacgagcacatcgagcaaatgcgtttgagctgcaccaaaagcatcttggagcgccgt
gatgtgatcgtggtggctaccgtgtcggccatctacggtatcggcgagcccgagagctac
caccagatgatcatgacgctgcgtgccggtgacaaagtgggccagcgcgacgccatcgcc
cagctggtgcgcatgcagtacgagcgcaacgaccaagatttttcacgcggcaaattccgc
gtgcgcggcgacacgattgacgtgtttcccgccgaacactccgagctggccattcgcatc
gagctgttcgatgacgagattgaaagcctgcaactgtttgacccgctcacgggccgcatc
cgccaaaaaattccgcgcttcaccatctatccctccagccactacgtcacgccgcgtgac
cgcgtgttggcggcggtggagaccatcaaggtggagttggccgatcgtttgaaagaactg
gtgggcatgaacaagctggtcgaagcccagcgcttagagcagcgcacgcgcttcgattta
gagatgctcagcgaagtaggccactgcaaaggcattgagaactacacccgccatttgtcg
ggtgcgccccctggagcgccgcccagcaccttgaccgactacatgcccaaagactcggtg
atgttcttggacgaaagccacgtcatgattggccagcttggcggcatgtacaacggtgac
cgtgcacgcaaaaccacgctggtggagtacggcttccgtctgcccagtgctttggacaac
cggcccttgaagctcgacgagtttgaaaaacgcatgcgccaagtggtgtttgtctcggcc
acgcccgccgattacgaaaagacccatgccagcaaagtggtggagcagttggtgcgcccc
acaggcttggtcgatccgctggtcgaagtgcgccccgccacccaccaagtggacgatgtg
ctgcaagagatccgcattcgcgtggaaatcaacgagcgcgtgctcatcaccacgctcacc
aagcgcatggccgagcagctgaccgattacctcaccgacaacggcgtgaaagtgcgctac
atccacagcgatgtggacacggtggagcgcgtcgaaatcttgcgtgatttgcgtttgggc
actttcgatgtgttggtgggcatcaacttgctgcgcgaaggcattgacttgcctgaggtg
tcgctggtggccattttggatgccgacaaagaaggcttcttgcgctctgagcgcagcttg
attcaaaccattggccgcgcggcgcgtaacctgagtggcaaagccattctgtatgccgac
cgcatgaccgagtcgatgaagaaggcgattggcgaaaccgagcgtcgccgcaccaagcaa
atcgcgcacaacctagagatgggtatcacgccacgcggtgtggtcaaggggattcgcgat
ttgatcgacggcgtctacagcgagaaggcgggcaaagaagcgcaagagcgcgagctgcaa
cgcgccgccatcgaagacatgagcgaacgcgatgtggccaaagaaatcaaacgcttggaa
aagctgatgatggaacacgcccgcaacctcgagtttgaaaacgctgctcgcgttcgcgac
caactggccgttctgcgcgaacaagcctttggtggggcagggcacgacaacgtgtcggtg
ctggcgcaaaaactttga
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