Limnohabitans sp. INBF002: LINBF2_10690
Help
Entry
LINBF2_10690 CDS
T09962
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LINBF2_10690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_10690 (mfd)
Enzymes [BR:
limi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LINBF2_10690 (mfd)
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LINBF2_10690 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
BDU52834
LinkDB
All DBs
Position
complement(1057928..1061413)
Genome browser
AA seq
1161 aa
AA seq
DB search
MHLPSLSPGKRFAMPRPVGSADALLLAQLGIREKAKQQRVAIITADAVDAQRLQDEMAFF
APDLRCVLFPDWETLPYDSFSPHQDLISERLATLWRISQGDADVVLIPATTALYRLAPPA
FLAGYTFHFKVKQALDEAKLKSQLTLAGYTHVTQVVSPGEYAVRGGLIDLFPMGSLVPYR
VDLFDNEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDAARALFRNRWREMLDGDPTK
SRIYKDIGNGVATAGIEYYLPLFFEETATVFDYLGTSATVVLHGDLEPVFQRFWQDTQDR
FRLVQGDPERPALPPTHLFLSAEQFYASANSYAQFALRPHVTDVIDNAFAQTLPDLTVVR
GAADPLQKLQAHAGKTANRLLILAESDGRRESLLDFLRSSNVSPPAFDSLAEFEGSAEKI
GIATAALQVGFSWTEAGLDLITETELFAVGATTRRRKKQEQVSDVEALIKDLSELNLGDP
VVHNAHGIGRYRGLINMDLGEKNADGSPALQEFLHLEYADNAVLYVPVSQLHLIGRYTGV
SADEAPLHKLGSAQWDKAKRRAAEQVRDAAAELLNIYARRAARQGHPFRYSPQDYETFAN
DFGFEETADQRAAIHAVMQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVAFL
APTTLLAEQHYQTLVDRFSKWPIKIAEMSRFRSAKEITAAAKGLAEGQVDIVVGTHKLLS
ESVKFKDLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSV
IATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQCYFLHNDVATIENRRAQLEELLPE
ARIAVAHGQMPERELERVMRDFVAQRYNMLLCSTIIETGIDVPSANTIIMSRADKFGLAQ
LHQLRGRVGRSHHQAYAYLMVPDTQGLTKQASQRLDAIQQMEELGSGFYLAMHDLEIRGA
GEVLGENQSGNMLEVGFQLYNEMLSEAVRALKNGEEPDLLSPLSATTEINLHAPALLPDD
YCGDVHLRLSFYKKLATAKTGDQIDALLEEIVDRFGKLPAQAQTLIDVHRLRVQARSYGV
TKVDAAPGVTHISFKPNPPFDAMRIIELVQKNKHIKLAGNDRLRIERELPEPQARAQMVR
DVLRSLGTPTAPVAKAAEAQS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgccctcattgagtcccggcaaacgatttgccatgccccgccctgtcggctct
gcggacgcattgctgctcgcacagttgggcattcgcgaaaaagccaaacaacaacgcgtg
gccatcatcaccgccgatgcggtcgatgcccagcgcctgcaagacgaaatggcgttcttc
gcccccgacttgcgctgcgtgctcttccccgactgggaaacactgccctacgacagcttc
tcgccccaccaagacctcatcagcgagcgcttggccaccttgtggcgcatctcgcagggt
gacgccgatgtggtgctgattccagccaccaccgcgctgtaccgcttggcaccgcctgcg
tttttggcgggctacaccttccacttcaaagtcaagcaggcgctggacgaggccaagctc
aagtcacagctcacattggcgggctacacccacgtcacccaagtggtcagccctggcgaa
tacgcagtgcgtggcggcttaattgacctcttcccgatgggctcgctggtgccctatcgc
gtcgatttgtttgacaacgaaatcgactctatccgcaccttcgacccagacagccaacgc
agcctctaccccgtgcccgaagtgcgcttgctaccaggccgcgagttcccgatggacgat
gccgcgcgtgcgctgtttcgcaaccgttggcgcgaaatgctcgatggtgacccgaccaag
agccgcatctacaaagacattggcaacggcgtggccaccgctggtattgagtactacctg
cctttgttctttgaagaaacggccacggtgtttgactaccttggcacctcagccacggtg
gtgttgcacggcgatttagagcccgtgttccagcgcttttggcaagacacgcaagaccgc
ttccggctcgtgcaaggcgaccccgaacgtcctgcgctgccacccacccatttgttttta
agcgccgagcagttttacgcctcggccaacagctatgcgcagtttgcgctgcgcccgcac
gtcaccgacgtgatcgacaacgcgtttgcccaaaccctgcccgacctcactgtggtgcgt
ggtgcggcagacccgctgcaaaagctgcaagcccacgctggcaaaaccgccaaccgcttg
ctcatcttggccgagagcgatggccgccgtgaaagcttgctcgacttcttgcgctcgtcc
aacgtcagcccgcctgcgtttgattcgttggccgagttcgaaggcagcgcagaaaaaatc
ggcatcgccaccgccgcactgcaagtgggctttagctggaccgaagcgggcctcgacctg
attaccgaaaccgagctgttcgctgtcggtgccaccacccgccgccgcaaaaaacaagaa
caagtcagcgatgtcgaagcgctcatcaaagacttgtccgagctcaacctcggtgaccct
gtggtgcacaacgcacacggcattggccgctaccgtggcctcatcaacatggacctaggc
gagaagaacgccgatggctcacccgcgctgcaagagtttttgcacctcgaatacgccgac
aacgccgtgctctatgtgcccgtcagtcagctacacctgattggccgctacaccggcgtg
agtgccgacgaagcaccgttgcacaaactcggctccgcccaatgggacaaagccaaacgc
cgcgctgccgagcaagtgcgcgatgccgccgccgagttgctcaatatttacgcccgccgc
gcagcgcgtcaaggccaccctttccgctactcgccgcaagactacgaaaccttcgccaac
gacttcggctttgaagaaaccgccgaccaacgcgccgccatccacgctgtcatgcaagac
atgatcagcccacgccccatggaccgcttggtgtgtggcgatgtgggctttggtaaaacc
gaggtggccttgcgtgctgccttcgtggccgtgaccggtggcaaacaagtggccttcttg
gcacccaccactttgctggccgagcagcattaccaaacactggtggaccgcttcagcaaa
tggcccatcaagattgccgagatgagccgctttcgttcggccaaagaaatcaccgccgcc
gccaaaggtttggccgaggggcaagttgacatcgtggtgggcacacacaagctgctcagc
gaatcggtcaagttcaaagacctgggtttgctcatcatcgacgaagagcaccgctttggc
gtgcgccacaaagaggccatgaaagccatgcgcgccgaggtagatgtgctcacgctcacc
gccacgcccattccacgcaccttgggcatggccctcgaaggcctgcgcgatttgagcgtg
atcgctaccgcaccccaacgccgcctcgccatcaaaacctttgtgcgcaacgaaggcaat
ggcgtgattcgcgaagccgtgttacgtgaactcaaacgtggtggccagtgttatttcttg
cacaacgatgtggccaccatcgagaaccgccgcgcgcaattggaagagctgctgcccgaa
gcacgcattgcagtcgcccacggccaaatgcctgagcgtgaactcgagcgcgtgatgcgc
gactttgtggcccagcgctacaacatgctgctgtgctccaccatcatcgagaccggcatt
gacgtgcccagcgccaacaccatcatcatgagccgtgccgacaagtttggtttggcacag
ctgcaccagttgcgcggtcgcgtgggccgcagccaccaccaagcctatgcctacctcatg
gtgcccgacacccaaggcctgaccaagcaagcctctcaacgcttggatgcaattcaacaa
atggaagagctgggctcaggcttttacctcgccatgcacgaccttgaaattcgtggcgca
ggcgaggtgctgggcgaaaaccaaagcggcaacatgctggaagtcggctttcagctctac
aacgaaatgctgtcggaggccgtgcgtgccttgaagaacggcgaagagcctgacttgctc
agcccgttgagtgccacgacagaaattaacctacacgcccccgccctgctgcccgacgac
tactgcggcgatgtgcacctgcgcttgtcgttctacaaaaaattggccactgccaaaaca
ggcgatcaaatcgacgcactgctagaagaaatcgtggaccgctttggcaaactgcccgcg
caagcgcaaaccctcatcgacgtgcaccgtctgcgcgtgcaagcccgcagctatggcgtg
accaaggtagacgcggcaccgggcgtgacccacatcagcttcaagcccaacccaccgttt
gacgccatgcgcatcatcgagttggtgcaaaaaaacaagcacatcaaactggcaggcaac
gaccgcctgcgcatcgagcgcgagctgcccgagccacaagcccgtgcacaaatggtgcgc
gatgtgttgcgctcactcggtacacccaccgcccccgtggccaaagcggcagaggcccag
tcgtaa
DBGET
integrated database retrieval system
