Limnohabitans sp. INBF002: LINBF2_11380
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Entry
LINBF2_11380 CDS
T09962
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03030
DNA replication
limi03430
Mismatch repair
limi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LINBF2_11380
03430 Mismatch repair
LINBF2_11380
03440 Homologous recombination
LINBF2_11380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
limi03032
]
LINBF2_11380
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_11380
Enzymes [BR:
limi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LINBF2_11380
DNA replication proteins [BR:
limi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LINBF2_11380
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LINBF2_11380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DOT1
Motif
Other DBs
NCBI-ProteinID:
BDU52903
LinkDB
All DBs
Position
complement(1130106..1131017)
Genome browser
AA seq
303 aa
AA seq
DB search
MTQDIEQLAQQLEQHPDYRVLRRLVPGRVFNTPAPGQKLSKGIVLDTETTGFDVATDRVI
ELGMLAFEFDAVTGVVYRVSEVFDELEDPGFAIPPASIAVHHITDEMVQGQRIDDARVAE
FLKNADVVIAHNAAFDRPFVEARWPMFEQLNWACSIKDIDWREEGFGSAKLEYLLSTQGY
FYEAHRAEADCWALLELLNQVLPQSQQTALLAVLLTLNKPQQKVYAINSPFETKDKLKAR
NYRWSAELRCWSRVVAGDAEMKQELEWLKHHVYAGRSARVELETTGGKVRYSNRLGNKEV
VTL
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagatatcgaacaactcgcccaacaactcgaacaacaccctgactaccgcgtg
ctgcgccgcctcgtgccgggccgtgtgttcaacacccctgcaccaggccaaaaactcagc
aaaggcatcgtgctcgacaccgagaccacaggctttgacgtggccacagaccgcgtgatt
gaactgggcatgttggcctttgaattcgacgctgtcacaggcgtggtctaccgtgtcagc
gaggtgttcgacgagctggaggaccccggttttgccattccccccgcctcgattgcggtg
caccacatcaccgacgagatggtgcaaggccaacgcattgacgacgcccgcgtggctgag
tttttgaaaaatgccgacgtggtcattgcccacaatgccgcgtttgaccgcccattcgtc
gaagcccgctggccgatgtttgagcaactcaactgggcttgcagcatcaaagacatcgac
tggcgtgaagaaggttttggctcggccaagctggagtatttgctcagcacccaaggctac
ttctacgaagcccaccgcgctgaagccgattgttgggcgctgctagagctgctcaaccaa
gtgctgccgcaaagccaacaaaccgccctgctcgccgtgctgttgaccttgaacaagcca
cagcaaaaggtgtacgccatcaactcgccgtttgagaccaaagacaaactcaaagcgcgc
aactaccgctggtctgccgagctgcgctgctggagccgtgtggtggcaggcgatgctgag
atgaaacaagagttggaatggctcaaacaccatgtgtacgcaggccgcagcgcgcgcgtg
gaactagaaaccacaggcggcaaagtgcgctactcaaaccgcttaggcaacaaagaagtc
gtcacgctctaa
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