Limnohabitans sp. INBF002: LINBF2_13750
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Entry
LINBF2_13750 CDS
T09962
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
limi
Limnohabitans sp. INBF002
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
limi03016
]
LINBF2_13750 (truB)
Enzymes [BR:
limi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
LINBF2_13750 (truB)
Transfer RNA biogenesis [BR:
limi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LINBF2_13750 (truB)
Prokaryotic type
LINBF2_13750 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
HTH_15
Motif
Other DBs
NCBI-ProteinID:
BDU53140
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All DBs
Position
complement(1391280..1392305)
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AA seq
341 aa
AA seq
DB search
MSAVGQSSGSTQAPSTRMPRVRVQRRPVHGVLLLDKPIGLSSNDALQKAKWLLRAEKAGH
TGTLDPLATGVLPLCFGAATKFSQLHLDADKTYETTVRLGIKTSTADAEGEVIQQRPVTC
TVGQVVEVLDRFMGPITQVPPMYSALKKDGKALYEYARAGETVEREPRHVVIHDLELLEM
QLNGDAPFLRLRVTCSKGTYIRTLGEDIAEALGCGGHLSALRRVATGPFDEADCVTLEDL
TAMDEPQREARLMPVQCLLADHTAVTLDAENAGRFLSGVRRRGVWADQDRVSVFGENPHA
LLGSAHVKAGELIPGRLLSPLEIQQILQRSPVNQPLLAQQA
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgttgggcagtcatcagggagcacccaagctcccagcacacgtatgccgcgc
gtacgggtgcaacgacgccctgtgcatggcgtgttgctgctggataagcccatcggtttg
tctagcaacgatgccttgcaaaaagccaaatggctgttacgtgccgaaaaagcaggccac
acgggtaccttagatcccttggctactggcgtgttgcctttgtgttttggcgcagccacc
aaattcagtcagctccatttggatgctgacaaaacctacgaaaccacggtgcgcttaggg
atcaaaaccagcaccgcggatgccgagggcgaggtcattcaacagcgccccgtcacttgt
accgtgggtcaagtggtggaagtgctggaccgtttcatgggcccgatcacgcaagtgccg
cccatgtacagcgccttgaaaaaagacggcaaggccttatatgaatatgcgcgcgcaggt
gagactgtggagcgcgagcctcgccatgtggtgattcacgatttagagctgcttgagatg
cagctcaatggcgatgcgccatttttgcgtttgcgcgtgacgtgtagcaaaggcacgtac
atccgcaccttgggtgaagacattgctgaggctttgggttgcggtggccatttgagcgct
ttgcgccgcgtggcgacggggccttttgacgaggcggattgtgtgaccttggaagacctg
accgccatggacgagccccaacgcgaagcgcgtttgatgcctgtgcaatgcttgttagct
gatcacacggctgtcacgttggatgctgagaatgcaggtcgcttcttgagcggcgtgcgt
cgtcgcggtgtttgggcagaccaggaccgcgtgagtgtgtttggagaaaacccacacgct
ttgctgggcagtgcccatgtcaaagcgggggaactgattccgggacgattgttgagtccc
cttgaaattcaacaaattttgcaaagatcgcctgtcaaccagcccctgctggcccagcag
gcataa
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