Limnohabitans sp. INBF002: LINBF2_14420
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Entry
LINBF2_14420 CDS
T09962
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LINBF2_14420 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
limi03021
]
LINBF2_14420 (rho)
03019 Messenger RNA biogenesis [BR:
limi03019
]
LINBF2_14420 (rho)
Transcription machinery [BR:
limi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LINBF2_14420 (rho)
Messenger RNA biogenesis [BR:
limi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LINBF2_14420 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA
AAA_19
nSTAND_NTPase5
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDU53207
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All DBs
Position
1458804..1460066
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEELEIENTGRMRKQELMFAIIKKRARAGEQVFADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRIPKDGERYFALTKLDKVN
DDLPENNKHKVMFENLTPLFPREQMKLEREIKGEENITGRIIDIIAPIGKGQRALVVAPP
KSGKTVMMQHIAHAIAANYPDAHMMVLLVDERPEEVTEMQRSVKAEVIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLDRRLYEKRVFPAIQL
NRSGTRREELLLPPEILSKTRILRQFMYNMDEIESMEMVLKSMKATKSNVEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgaacgaactcaaggcactgcatgtgtctgaagtgctgaaacaagccgaagaa
ctcgaaatcgaaaacacaggccgcatgcgcaagcaagagctgatgtttgccatcatcaaa
aagcgcgctcgcgcgggtgaacaagtgtttgccgatggtgtgctcgaaatcttgcccgac
ggctttggcttcttgcgcagccccgacaccagctacacagcctcgactgacgacatctac
atcagccccagccaagtgcgccgcttcaacctgcacaccggcgacatgattgaaggcgaa
gtgcgcatccccaaagacggcgagcgctactttgcactgaccaagcttgacaaggtcaac
gacgatctgcctgagaacaacaagcacaaggtcatgttcgagaacttgaccccgctgttc
ccccgcgaacagatgaagctggaacgcgagatcaagggcgaagaaaacatcaccggccgc
atcatcgacatcatcgcgcccatcggcaaaggccaacgcgccttggtcgtcgccccgccc
aagagcggtaagaccgtgatgatgcagcacatcgcccacgccatcgcggccaactacccc
gacgcccacatgatggtgttgttggtggacgagcgtcccgaagaagtgaccgaaatgcaa
cgctcggtgaaagccgaagtgattgcctccacctttgacgaacccgccgcacgccatgtg
cacgtggctgaaatggtgattgaacgcgccaagcgtttggtggaattgaaaaaagatgtg
gtcatcttgctcgactccatcacccgcctcgctcgcgcctacaacaacgtggtgccttca
tcgggcaaagtgttgtctggcggcgtggactccaacgccttgcaacgccccaagcgcttc
tttggcgcagcacgcaaagtggaagaaggcggctcactcaccatcatcgccacagccttg
gtcgacactggcagccgcatggacgaagtgatctttgaagaattcaaaggcacaggtaac
tgtgaaattcacctcgaccgccgcttgtacgaaaagcgcgtgttcccagccattcagctc
aaccgcagcggcacacgccgcgaagagttgttgttgccacccgagatcttgtcaaagacc
cgcatcttgcgtcagttcatgtacaacatggacgaaatcgaatccatggaaatggtcttg
aagagcatgaaggcgaccaagtccaacgtcgagttcttcgacatgatgcgtcgcggcggt
taa
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