Limnohabitans sp. INBF002: LINBF2_14710 Help Entry LINBF2_14710      CDS       T09962                                  Name (GenBank) ATP-dependent helicase   KO K03578   ATP-dependent RNA helicase HrpA [EC:5.6.2.6] Organism limi  Limnohabitans sp. INBF002 Brite KEGG Orthology (KO) [BR:limi00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:limi03019]     LINBF2_14710 Enzymes [BR:limi01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      LINBF2_14710 Messenger RNA biogenesis [BR:limi03019]  Prokaryotic type   Bacterial mRNA degradation factors    Other RNA degradation factors     Others      LINBF2_14710 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DUF3418 Helicase_C OB_NTP_bind DEAD HA2_C HA2_N AAA_22 T2SSE AAA_19 nSTAND3 AAA_25 NACHT PhoH AAA_23 AAA_30 SRP54 FtsK_SpoIIIE ResIII Motif Other DBs NCBI-ProteinID:  BDU53236 LinkDB All DBs Position complement(1496583..1500782) Genome browser AA seq 1399 aa AA seqDB search MSIKLVPVLSTSVPFQIEFPESLPVSARREEIMAAMQAHQVVIVCGETGSGKTTQLPKMA LALGRGQGRELGANPKPGQRKQIIGHTQPRRIAASSVAKRIAEELNTPLGDVVGFKVRFQ DRLSKDASVKLMTDGILLAETQTDPLLKAYDTIIIDEAHERSLNIDFLLGYLREILPRRP DLKIIVTSATIDADRFAQHFASMRPAQGRPKAGSAPSGGSDPHEVGERGGMVLCPAPVLM VSGRTFPVEMRYRPFEESRDYDLNNAISDGVDELWSNPSQQGDILVFLPGEREIREAADH LRAHLSHSPVMRSAEVLPLFARLSSAEQDRVFDTRGGRRIVLATNVAETSLTVPGIRYVI DAGTARVKRYSWRSKVEQLMVEPISQAAANQRAGRCGRVANGICIRLYDEVDFNGRTKFT DPEILRSSLAGVILRMKSLHLGNVEQFPFLEAPRPKAIADGYQLLSELGAVDDDNELTPM GRELSRLPLDPRVGRMILEARDRNALDEVLVIASALSVQDVRDRPMEAQAAADQAHAKFD DDRSEFSGYLNLWHWLDNARGGKPHAPAAVNAQSMGKLQLGGKPQAHKQGTIQVGATGVP AVHKLSNRQYEALLRQNFINVRRVREWRDTHSQLLTVVTEHKWRLNTLPASYEQLHLSML AGLLGNVGCKLEPAAGQTSSNEYLGARSIKFYPHPGAHLRKKPGRWLVVAELVETTRLFG RGIAAIEPQWLEQVGSHLLKKQLLDPHWEKKAGEVKALERATLYGLVVYNGRRVSYSKVD LAGAREIFIREALVAGELDTKLPFLAANQKLIAQVEELEHKSRRQDVLVDDALIYAFYDQ QLPADVCGLVTLESWYRDEVKRQPKLLHLSREELMRHQAAGITTQAFPKTLRMGGVDCAA DYLHEPGDAKDGLTVTVPLFVLNQVSEERAEWLVPGMLNQKIHALLKTLHQRPRSRLVPL PDSAARLTEALSADVVFGSGPLVDALLKLVRDATQVDVKRADFKLDMLAQHLFMNFRVVD EHGRQLGHGRNLGALKAELGSQARGAFQALAALKGVGTLSAGVGAGVDGAAALADGEPRV PHASQKSSPAAPHQPTPSGRVASVAASAAQRYTSWTFGELPELMEITKGNQTLIGFPALV DVGDAVCIEVFDEPEVAATKHRAGLRRLFAMQIKDALKYLEKNLPDLQKMSVAYMMVGKS PDGSGGGTAEELKQQILDVALDRAFLLDPLPTSEADFKRRLDEGRGRLTLIANEVARLAA TVLTEFAAANRKVKDTKTSPDSVADAAQQLQRLVGKRFITDTPFSQLQHFARYLKAVVLR LDKLRADPARDAAKLAELKPLEQKYWRLVAERKGVTDARMQEFRWLLEELRVSFFAQELR TPQPVSVKRLDKAWQQLSY NT seq 4200 nt NT seq  +upstreamnt  +downstreamnt ttgtctatcaagttagtgcctgttttgtccacgtccgttcccttccagattgaatttcca gaatcgttgcccgtctcggccagacgcgaggaaatcatggccgccatgcaggcccaccaa gtggtcatcgtgtgtggcgaaacgggctctggcaaaaccacgcagctgcccaaaatggcg ctggctctgggccgcgggcaagggcgcgaattgggggccaaccccaagcctgggcaacgc aaacaaatcattggccacacgcagccgcgccgcattgccgccagttcggtggccaagcgc attgccgaagagctgaacacgcccttgggcgatgtggtgggtttcaaggtgcggtttcaa gaccgactgagcaaagacgcttcggtcaagttgatgaccgacggcatcttgctggccgaa acccaaaccgacccgctgctcaaagcctacgacaccatcatcattgacgaggcccacgag cgcagcctgaacatcgactttctgctgggctacttgcgcgaaatcttgccgcgcaggccg gacctcaaaatcatcgtcacctcggccacgattgacgccgaccggtttgcgcagcacttt gcgtcgatgaggccggcgcagggccgccccaaggcgggctcagccccctcggggggcagc gacccacacgaagtgggggagcgtgggggcatggtgttatgccccgcgccagtcttgatg gtctcgggccgcacctttcccgtggagatgcgctatcgccccttcgaagaaagccgtgat tacgacttgaataacgccatttctgacggcgtggacgagctgtggagcaacccctcgcag caaggtgacatcttggtgtttttgcctggcgagcgcgagattcgcgaagccgccgaccac ctgcgcgcgcacctgagccactcgcccgtgatgcgcagcgctgaagtgctgccgctgttc gcgcgcctgtccagcgccgagcaagaccgcgtgttcgacacgcgtggcgggcgccgcatt gtgctggccaccaacgtggctgaaacctcgctgaccgtgcctggcattcgttatgtgatt gatgcaggcaccgcccgcgtgaagcgttacagctggcgcagcaaggtggagcagttgatg gtcgagcccatcagccaagccgcggccaaccaacgcgcaggccgatgtggtcgcgtggcc aacggcatttgcattcgcttgtacgacgaagtggatttcaacggcagaacgaaattcacc gaccccgaaattttgcgcagctcgctggccggtgtgatcttgcgcatgaagtcgctgcat ttgggcaacgtggagcagttcccgttcttggaggcgccacgccccaaagccatcgccgac ggctaccaacttttgagcgaactcggtgcggtggatgacgacaacgaactcacgcccatg ggccgcgagttgtccagactgcccctcgacccgcgcgtgggtcgcatgattttggaagcg cgtgaccgcaacgctttagacgaagtgttggtcatcgcctcggccttgagcgtgcaagat gtgcgtgaccgcccgatggaagcgcaggctgccgccgaccaagcgcacgccaagtttgac gacgaccgcagcgaattcagcggctacctcaacctctggcattggctagacaacgcacgc ggcggcaagccgcatgcacccgctgccgtcaacgcgcagagcatgggcaagctgcaactc ggcggcaagccacaggctcacaaacaaggcaccatccaagtgggggcaaccggcgtgcct gccgtgcacaagctgagcaaccgccaatacgaagcgctgttgcgtcaaaacttcatcaac gtgcgccgtgtgcgcgaatggcgcgatacccactcgcagttgttgaccgtggtgacggag cacaaatggcgcttgaacaccttgcccgccagttacgagcagctgcatttgtctatgttg gcgggcttgctgggcaacgtgggctgcaagctcgaacccgccgcagggcaaaccagcagc aacgaatatttgggtgcgcgcagcatcaagttttacccgcaccccggcgcgcacttgcgc aagaagccggggcgctggttggtggtggctgagttggtcgagaccacgcgcttgtttggc cgtggcatcgccgccatcgagccgcagtggttagagcaagtgggcagccatttgctgaaa aaacaattgctcgacccacattgggaaaagaaagcgggcgaagtcaaagccctagagcgc gccaccttgtacggcttggtggtctacaacggccgccgcgtcagttacagcaaagtggac ttggccggcgcacgcgaaatcttcatccgcgaagctttggtggcgggcgagcttgacacc aagctgccgttcttggctgccaaccaaaagctcatcgcgcaagtggaagagctagaacac aagtcgcgccgccaagacgtgttggtggacgacgcgctgatttacgccttttacgaccag cagttgcccgccgacgtgtgcggcttggtgacgctggaaagctggtaccgcgacgaggtg aaacgccagcccaagctgctgcacctcagtcgcgaagagctgatgcgccaccaagccgcg ggcatcaccacgcaagcgtttccgaagacgctgcgtatgggcggtgtggactgcgcggcc gattatttgcacgaacccggcgacgccaaagacggcctgaccgtgaccgtgccgctgttt gtgctgaaccaagtcagcgaagaacgcgccgagtggttggtgccgggcatgctgaaccaa aaaattcacgccttactcaaaaccttgcaccaacgccctcgctcgcgtttggtgccgttg cctgacagcgccgcccgcttgaccgaggctttgtcggctgacgtggtgtttggttctggg ccgttggtggatgccttgctcaagctggtgcgcgatgccacccaagtggacgtgaagcgc gccgacttcaagctcgacatgctggcccagcacctgttcatgaactttcgggtggtggac gaacacgggcgccagttgggccacggtcgcaacttgggcgcgttgaaagccgagttgggc agccaagcgcgtggtgcgtttcaggcgttggcggctttgaaaggtgtgggtactttgagt gctggcgttggtgcgggcgttgacggagctgcggcgttggctgatggggagccgcgggtt cctcatgcctcacagaaatcgtcacccgcggctccccatcagccaacaccttctggtcgt gtggcgtctgttgctgcgtctgctgctcagcgttacaccagctggacttttggcgagctg cccgagttgatggagatcaccaaaggcaaccaaaccctcattggctttccggccttggtg gatgtgggcgacgccgtgtgcatcgaggtgtttgacgagcccgaagtggccgcgaccaaa caccgtgcgggcctgcgccgcttgtttgccatgcagatcaaagacgcgctcaagtacttg gagaaaaacttacccgacctgcaaaaaatgtcggtcgcgtacatgatggtcggcaagtcg cctgacggctcaggcggcggcaccgccgaagaactgaaacagcaaattttggatgtggct ttggatcgcgccttcttgctcgacccacttccaacaagcgaggccgatttcaaacgccgt ctcgacgaaggccgaggccgattgacattgattgccaacgaagtagcccgtttggccgcc accgtgctgaccgaatttgccgctgccaaccgcaaagtcaaagacaccaaaaccagtccc gacagcgtggccgacgccgctcagcaactgcagcgcttggtgggcaaacgcttcatcacc gacacgccatttagccagctgcaacactttgcccgctacctcaaagccgtggtgctacgc ctcgacaaactgcgcgccgaccccgcacgcgatgccgccaaactggccgaactcaaaccg ctggagcaaaagtattggcgcttggtggccgagcgcaaaggcgtgaccgatgcgcgcatg caagagttcaggtggctattggaagagctgcgtgtgagcttcttcgcgcaagagctgcgc acgcctcagccggtgagtgtgaagcgactggataaggcttggcagcagttgagttattga

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