KEGG   Limnohabitans sp. INBF002: LINBF2_16870
Entry
LINBF2_16870      CDS       T09962                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
limi  Limnohabitans sp. INBF002
Pathway
limi00740  Riboflavin metabolism
limi01100  Metabolic pathways
limi01110  Biosynthesis of secondary metabolites
limi01240  Biosynthesis of cofactors
limi02024  Quorum sensing
Module
limi_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:limi00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    LINBF2_16870 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LINBF2_16870 (ribD)
Enzymes [BR:limi01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     LINBF2_16870 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     LINBF2_16870 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam
Other DBs
NCBI-ProteinID: BDU53452
LinkDB
Position
1727491..1728594
AA seq 367 aa
MSFSEHDTPHMTSALALAREALFLTSPNPRVGCVIVGADGSVLGSGHTQRAGEAHAEVMA
LRDAQAKNNDVKGATAYVTLEPCSHQGRTGPCCDALIHAGLGRVVVAEGDPNPQVAGQGV
ARLRAAGVQVDVGLLANEAHELNIGFFKRMTHGTPWVRMKVAASLDGQTALENGVSQWIT
SAPARDDGHAWRARACAVLTGIGTVLEDDPQLDVRAVPTPRQPTLVVMDSQLETPLTAKL
FTPQRPVWIYCAVDNAERRQALEAKGAQVVCLPNASGKVDLAAMLQDLGQKQINEVHVEA
GHKLNGSLLREGLVDELLTYLAPKLMGQGRGMTNLGPFTTLDDAKALAFHEVTQIGPDLR
ILARLSR
NT seq 1104 nt   +upstreamnt  +downstreamnt
atgagtttttctgagcacgacaccccccacatgacgagcgccttggccctggcgcgcgag
gctttgttcttgacctcgcccaacccccgcgtgggctgcgtgatcgtaggcgcggacggt
tcagtgctgggcagcggccacacgcaacgtgcaggcgaagcccacgccgaagtgatggcc
ttgcgcgatgcacaagccaaaaacaacgatgtcaaaggcgccacagcgtatgtgacgcta
gaaccctgcagccaccaaggccgcaccggcccctgctgcgacgcactcatccacgctggc
ttgggccgtgtggtggtagccgaaggtgaccccaacccacaagtggcaggccaaggcgtg
gcacgtttgcgtgccgcaggcgtgcaagtggacgtgggtttactagccaacgaagcacac
gaactcaacatcggttttttcaaacgtatgacgcacggcacgccctgggtgcgcatgaaa
gtggccgcctcgctcgacggccaaaccgcgctggagaacggcgtgagccagtggatcacc
tctgcccccgcgcgtgacgacgggcacgcctggcgtgcccgtgcttgcgcggtgctcacc
ggcatcggcaccgtgcttgaagacgacccgcaactggatgtgcgcgccgtgcccaccccg
cgtcagcccaccttggtggtgatggacagccaactcgaaaccccgctcacggccaagctc
tttaccccgcaacgtcctgtgtggatttactgtgcggtcgacaacgccgagcgccgccaa
gcccttgaagccaaaggcgcccaagtggtgtgcctgcccaatgcgtctggcaaggtggac
cttgcggccatgctccaagaccttggccaaaagcaaatcaacgaagtgcatgtggaagcc
ggccacaaactcaacggctctttgttgcgcgaaggcttggtggacgagctgctcacctac
ctcgcgcccaaactgatgggccaaggccgaggcatgacaaatttggggcctttcacgact
ttggacgatgcaaaagccctcgcgtttcacgaagtgacacaaatcggccctgatttaagg
atattggcgcgcctgagccggtaa

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